Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 16357..16566 | Replicon | chromosome |
| Accession | NZ_CP026719 | ||
| Organism | Enterobacter cloacae complex sp. strain AR_0060 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 16370..16473 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 16357..16566 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM439_RS00065 (AM439_00065) | 12625..14073 | + | 1449 | WP_204166846.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| AM439_RS00070 (AM439_00070) | 14180..14419 | + | 240 | WP_003859885.1 | YebV family protein | - |
| AM439_RS00075 (AM439_00075) | 14454..15098 | - | 645 | WP_017384338.1 | protein-serine/threonine phosphatase | - |
| AM439_RS00080 (AM439_00080) | 15266..16246 | + | 981 | WP_039270562.1 | VirK/YbjX family protein | - |
| AM439_RS00085 (AM439_00085) | 16292..16489 | + | 198 | WP_017693250.1 | hypothetical protein | - |
| - | 16357..16566 | + | 210 | - | - | Antitoxin |
| - | 16370..16473 | - | 104 | - | - | Toxin |
| AM439_RS00090 (AM439_00090) | 16615..16953 | - | 339 | WP_003859787.1 | YebY family protein | - |
| AM439_RS00095 (AM439_00095) | 16970..17839 | - | 870 | WP_017693249.1 | copper homeostasis membrane protein CopD | - |
| AM439_RS00100 (AM439_00100) | 17841..18212 | - | 372 | WP_017384342.1 | CopC domain-containing protein YobA | - |
| AM439_RS00105 (AM439_00105) | 18350..18580 | + | 231 | WP_049132918.1 | DNA polymerase III subunit theta | - |
| AM439_RS00110 (AM439_00110) | 18692..19342 | + | 651 | WP_003859783.1 | carbon-nitrogen hydrolase family protein | - |
| AM439_RS00115 (AM439_00115) | 19367..20029 | + | 663 | WP_047733794.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T95531 NZ_CP026719:c16473-16370 [Enterobacter cloacae complex sp.]
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGATTGAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 210 bp
>AT95531 NZ_CP026719:16357-16566 [Enterobacter cloacae complex sp.]
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
TTTTCAAGCAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGC
TAAAAGTTGGCATTAATGCAGGCTCAATCGCCTTGCCCTTTAAGAATAGATGACGACGTCAGGTTTTCCAGTCCACAGTA
AAAGTGGTCTGAAAAAAAGCGTCAGAACATCACTAAATGTGAAAAACCGC
