Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1152269..1152437 | Replicon | chromosome |
| Accession | NZ_CP026715 | ||
| Organism | Klebsiella oxytoca strain AR_0028 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1152327..1152430 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1152269..1152437 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM355_RS05525 | 1147396..1149456 | + | 2061 | WP_014229840.1 | oligopeptidase B | - |
| AM355_RS05530 | 1149463..1150122 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| AM355_RS05535 | 1150201..1150431 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| AM355_RS05540 | 1150567..1150941 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| AM355_RS05545 | 1150946..1151815 | + | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| AM355_RS05550 | 1151832..1152170 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 1152269..1152437 | - | 169 | - | - | Antitoxin |
| - | 1152327..1152430 | + | 104 | - | - | Toxin |
| AM355_RS05555 | 1152555..1153514 | - | 960 | WP_025106131.1 | spore coat U domain-containing protein | - |
| AM355_RS05560 | 1153529..1155859 | - | 2331 | WP_047723554.1 | fimbrial biogenesis outer membrane usher protein | - |
| AM355_RS05565 | 1155862..1156626 | - | 765 | WP_085520881.1 | molecular chaperone | - |
| AM355_RS05570 | 1156645..1157163 | - | 519 | WP_064358186.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T95515 NZ_CP026715:1152327-1152430 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT95515 NZ_CP026715:c1152437-1152269 [Klebsiella oxytoca]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
