Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3005379..3005519 | Replicon | chromosome |
| Accession | NZ_CP026709 | ||
| Organism | Citrobacter koseri strain AR_0024 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3005381..3005484 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3005379..3005519 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AM351_RS14645 | 3001265..3002374 | + | 1110 | WP_060816006.1 | recombinase RecT | - |
| AM351_RS14650 | 3002409..3002753 | + | 345 | WP_060816005.1 | hypothetical protein | - |
| AM351_RS14655 | 3002746..3003354 | + | 609 | WP_060816004.1 | hypothetical protein | - |
| AM351_RS14660 | 3003344..3003616 | + | 273 | WP_060816003.1 | hypothetical protein | - |
| AM351_RS14665 | 3003624..3003863 | + | 240 | WP_060816002.1 | DUF4060 family protein | - |
| AM351_RS14670 | 3003925..3004197 | + | 273 | WP_060816001.1 | excisionase | - |
| AM351_RS14675 | 3004172..3005251 | + | 1080 | WP_060816000.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 3005379..3005519 | + | 141 | - | - | Antitoxin |
| - | 3005381..3005484 | - | 104 | - | - | Toxin |
| AM351_RS14685 | 3005640..3005978 | - | 339 | WP_012132024.1 | YebY family protein | - |
| AM351_RS14690 | 3005995..3006870 | - | 876 | WP_077956859.1 | copper homeostasis membrane protein CopD | - |
| AM351_RS14695 | 3006870..3007244 | - | 375 | WP_012132022.1 | CopC domain-containing protein YobA | - |
| AM351_RS14700 | 3007385..3007615 | + | 231 | WP_024130259.1 | DNA polymerase III subunit theta | - |
| AM351_RS14705 | 3007721..3008377 | + | 657 | WP_024130258.1 | carbon-nitrogen hydrolase family protein | - |
| AM351_RS14710 | 3008401..3009063 | + | 663 | WP_012132019.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2939351..3027296 | 87945 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T95502 NZ_CP026709:c3005484-3005381 [Citrobacter koseri]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 141 bp
>AT95502 NZ_CP026709:3005379-3005519 [Citrobacter koseri]
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
ATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTAAGTCGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGT
