Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | parDE/RHH(antitoxin) |
Location | 153225..153730 | Replicon | chromosome |
Accession | NZ_CP026680 | ||
Organism | Pseudomonas aeruginosa strain F5677 |
Toxin (Protein)
Gene name | parE | Uniprot ID | V6A7K8 |
Locus tag | HV91_RS00710 | Protein ID | WP_003083773.1 |
Coordinates | 153225..153506 (-) | Length | 94 a.a. |
Antitoxin (Protein)
Gene name | parD | Uniprot ID | A0A1C7BDS9 |
Locus tag | HV91_RS00715 | Protein ID | WP_003083775.1 |
Coordinates | 153503..153730 (-) | Length | 76 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
HV91_RS00685 | 148476..149825 | + | 1350 | WP_003142411.1 | C4-dicarboxylate transporter DctA | - |
HV91_RS00690 | 149874..150560 | + | 687 | WP_003083762.1 | FadR family transcriptional regulator | - |
HV91_RS00695 | 150661..151395 | + | 735 | WP_004346926.1 | GntR family transcriptional regulator | - |
HV91_RS00700 | 151599..151985 | + | 387 | WP_014602345.1 | aegerolysin family protein | - |
HV91_RS00705 | 152017..152925 | - | 909 | WP_003083769.1 | LysR family transcriptional regulator | - |
HV91_RS00710 | 153225..153506 | - | 282 | WP_003083773.1 | type II toxin-antitoxin system toxin ParE | Toxin |
HV91_RS00715 | 153503..153730 | - | 228 | WP_003083775.1 | CopG family ribbon-helix-helix protein | Antitoxin |
HV91_RS00720 | 153906..154526 | - | 621 | WP_003101226.1 | hypothetical protein | - |
HV91_RS00725 | 154627..155127 | + | 501 | WP_003101228.1 | LEA type 2 family protein | - |
HV91_RS00730 | 155200..155541 | + | 342 | WP_003101229.1 | alkylphosphonate utilization protein | - |
HV91_RS00735 | 155623..157050 | - | 1428 | WP_003083784.1 | GABA permease | - |
HV91_RS00740 | 157219..158712 | - | 1494 | WP_003083788.1 | CoA-acylating methylmalonate-semialdehyde dehydrogenase | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 a.a. Molecular weight: 10462.19 Da Isoelectric Point: 10.0435
>T95436 WP_003083773.1 NZ_CP026680:c153506-153225 [Pseudomonas aeruginosa]
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLERWPFSAPFRVKGKE
IQILRIDRVEITP
MSLKWTRKAAADLDAIYDHYVVLIGPEKALKAVQDIVEQVKPLQQVANQGAGRPSEVPGVRTLTLERWPFSAPFRVKGKE
IQILRIDRVEITP
Download Length: 282 bp
>T95436 NZ_CP026680:c153506-153225 [Pseudomonas aeruginosa]
ATGAGCCTGAAGTGGACCCGCAAGGCGGCCGCCGACCTGGACGCCATCTACGACCATTACGTCGTGCTGATCGGCCCGGA
AAAAGCTCTGAAAGCCGTTCAGGACATCGTCGAGCAGGTGAAACCGCTGCAGCAGGTAGCCAACCAGGGGGCAGGGCGGC
CCAGCGAGGTGCCAGGCGTACGCACCCTGACCCTGGAGCGCTGGCCGTTCAGCGCCCCGTTTCGGGTTAAAGGCAAGGAA
ATCCAGATTTTGCGCATCGACAGGGTCGAAATTACCCCCTGA
ATGAGCCTGAAGTGGACCCGCAAGGCGGCCGCCGACCTGGACGCCATCTACGACCATTACGTCGTGCTGATCGGCCCGGA
AAAAGCTCTGAAAGCCGTTCAGGACATCGTCGAGCAGGTGAAACCGCTGCAGCAGGTAGCCAACCAGGGGGCAGGGCGGC
CCAGCGAGGTGCCAGGCGTACGCACCCTGACCCTGGAGCGCTGGCCGTTCAGCGCCCCGTTTCGGGTTAAAGGCAAGGAA
ATCCAGATTTTGCGCATCGACAGGGTCGAAATTACCCCCTGA
Antitoxin
Download Length: 76 a.a. Molecular weight: 8556.58 Da Isoelectric Point: 5.5740
>AT95436 WP_003083775.1 NZ_CP026680:c153730-153503 [Pseudomonas aeruginosa]
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHTEIEKRWGLQ
MSTVVSFRADDALVAALDELARATHRDRPYHLRQALAQYLERQQWQVAAIDEGLADANAGRLLEHTEIEKRWGLQ
Download Length: 228 bp
>AT95436 NZ_CP026680:c153730-153503 [Pseudomonas aeruginosa]
ATGAGCACCGTAGTCTCGTTCCGCGCCGATGACGCCCTGGTCGCGGCCCTCGACGAACTGGCCCGCGCCACCCACCGCGA
CCGCCCCTACCACCTGCGGCAGGCGCTCGCGCAGTACCTGGAAAGGCAGCAGTGGCAGGTCGCTGCCATCGATGAAGGCT
TGGCCGATGCCAATGCCGGTCGCCTGCTGGAACACACCGAGATCGAGAAGCGCTGGGGGCTGCAATGA
ATGAGCACCGTAGTCTCGTTCCGCGCCGATGACGCCCTGGTCGCGGCCCTCGACGAACTGGCCCGCGCCACCCACCGCGA
CCGCCCCTACCACCTGCGGCAGGCGCTCGCGCAGTACCTGGAAAGGCAGCAGTGGCAGGTCGCTGCCATCGATGAAGGCT
TGGCCGATGCCAATGCCGGTCGCCTGCTGGAACACACCGAGATCGAGAAGCGCTGGGGGCTGCAATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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