Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3449839..3450110 | Replicon | chromosome |
| Accession | NZ_CP026612 | ||
| Organism | Escherichia coli strain DTU-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3449877..3449980 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3449839..3450110 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C4J63_RS17780 | 3446996..3448435 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C4J63_RS17785 | 3448553..3448789 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C4J63_RS17790 | 3448894..3449085 | + | 192 | WP_000457842.1 | YebW family protein | - |
| C4J63_RS17795 | 3449086..3449742 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 3449839..3450110 | + | 272 | - | - | Antitoxin |
| - | 3449877..3449980 | - | 104 | - | - | Toxin |
| C4J63_RS17800 | 3450138..3450479 | - | 342 | WP_000976476.1 | YebY family protein | - |
| C4J63_RS17805 | 3450492..3451364 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| C4J63_RS17810 | 3451368..3451742 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C4J63_RS17815 | 3451881..3452111 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C4J63_RS17820 | 3452213..3452869 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C4J63_RS17825 | 3452893..3453555 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T95276 NZ_CP026612:c3449980-3449877 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT95276 NZ_CP026612:3449839-3450110 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
