Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relBE/ParE-YafN
Location 672653..673181 Replicon chromosome
Accession NZ_CP026604
Organism Catenovulum sp. CCB-QB4

Toxin (Protein)


Gene name relE Uniprot ID -
Locus tag C2869_RS02525 Protein ID WP_108601460.1
Coordinates 672894..673181 (+) Length 96 a.a.

Antitoxin (Protein)


Gene name relB Uniprot ID -
Locus tag C2869_RS02520 Protein ID WP_108601459.1
Coordinates 672653..672904 (+) Length 84 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C2869_RS02500 668513..670357 - 1845 WP_108601455.1 FAD-dependent oxidoreductase -
C2869_RS02505 670604..671368 + 765 WP_108601456.1 helix-turn-helix domain-containing protein -
C2869_RS02510 671422..671937 + 516 WP_108601457.1 demethoxyubiquinone hydroxylase family protein -
C2869_RS02515 672141..672569 + 429 WP_108601458.1 GFA family protein -
C2869_RS02520 672653..672904 + 252 WP_108601459.1 type II toxin-antitoxin system Phd/YefM family antitoxin Antitoxin
C2869_RS02525 672894..673181 + 288 WP_108601460.1 type II toxin-antitoxin system RelE/ParE family toxin Toxin
C2869_RS02530 673249..673482 + 234 WP_108601461.1 hypothetical protein -
C2869_RS02535 673766..674731 - 966 WP_159083997.1 family 16 glycosylhydrolase -
C2869_RS02540 674795..676414 - 1620 WP_108601463.1 sulfatase-like hydrolase/transferase -
C2869_RS02545 676442..678127 - 1686 WP_108601464.1 Na+:solute symporter -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin-antitoxin system, RelE/ParE toxin family

(6-84)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(11-71)


Sequences

Toxin        


Download         Length: 96 a.a.        Molecular weight: 11051.20 Da        Isoelectric Point: 10.5588

>T95245 WP_108601460.1 NZ_CP026604:672894-673181 [Catenovulum sp. CCB-QB4]
MTYRLKFLPIAKKEWDKLAEPLKVQFKKKLAERLVNPHVPSAKLRGFDSVYKIKLRTAGYRLAYEVIDDEIVIYVLAIGK
RDKDAIYKKLASRLG

Download         Length: 288 bp

>T95245 NZ_CP026604:672894-673181 [Catenovulum sp. CCB-QB4]
ATGACTTATAGATTAAAGTTTTTGCCTATTGCAAAAAAAGAGTGGGATAAGTTAGCAGAGCCTTTAAAAGTCCAATTTAA
AAAGAAACTCGCAGAGCGACTCGTGAATCCACACGTACCCTCTGCCAAGCTGCGAGGGTTCGATTCGGTATATAAAATTA
AATTGCGCACAGCAGGCTACCGATTGGCATACGAGGTCATTGATGACGAAATTGTCATCTACGTATTGGCCATAGGAAAG
CGTGATAAAGATGCGATATATAAAAAGTTAGCATCTCGCTTGGGGTAA

Antitoxin


Download         Length: 84 a.a.        Molecular weight: 9217.45 Da        Isoelectric Point: 4.1473

>AT95245 WP_108601459.1 NZ_CP026604:672653-672904 [Catenovulum sp. CCB-QB4]
MRQVLADCSASISELKKNPTALLNEADGAAIAILNHNKPAAYLVPAETYEWLMEIVEDYELAKIVDERRRDLSSAVEVSL
DDL

Download         Length: 252 bp

>AT95245 NZ_CP026604:672653-672904 [Catenovulum sp. CCB-QB4]
ATGAGACAAGTTCTAGCCGATTGTTCAGCAAGTATTTCTGAGCTAAAAAAAAATCCAACAGCTTTACTTAATGAAGCTGA
TGGTGCCGCAATAGCAATATTAAATCACAATAAACCCGCTGCCTATTTAGTTCCTGCCGAGACTTATGAATGGTTAATGG
AAATTGTAGAAGATTATGAGCTAGCTAAAATAGTAGACGAACGTCGTCGTGATCTATCGAGCGCAGTTGAAGTTAGTTTA
GATGACTTATAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References