Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2043495..2043640 | Replicon | chromosome |
| Accession | NZ_CP026585 | ||
| Organism | Klebsiella pneumoniae strain WCHKP649 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2043531..2043633 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2043495..2043640 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BT120_RS11615 | 2038625..2040685 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| BT120_RS11620 | 2040689..2041348 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| BT120_RS11625 | 2041427..2041657 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| BT120_RS11630 | 2041770..2042144 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| BT120_RS11635 | 2042148..2043017 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| BT120_RS11640 | 2043031..2043372 | + | 342 | WP_015874944.1 | YebY family protein | - |
| - | 2043495..2043640 | - | 146 | - | - | Antitoxin |
| - | 2043531..2043633 | + | 103 | - | - | Toxin |
| BT120_RS11645 | 2043675..2043866 | - | 192 | WP_004175432.1 | hypothetical protein | - |
| BT120_RS11650 | 2044256..2045146 | - | 891 | WP_085353163.1 | VirK/YbjX family protein | - |
| BT120_RS11655 | 2045381..2046034 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| BT120_RS11660 | 2046031..2046222 | - | 192 | WP_002911395.1 | YebW family protein | - |
| BT120_RS11665 | 2046320..2046559 | - | 240 | WP_002911393.1 | YebV family protein | - |
| BT120_RS11670 | 2046675..2048108 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T95167 NZ_CP026585:2043531-2043633 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT95167 NZ_CP026585:c2043640-2043495 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
