Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | vapBC/VapC-VagC |
Location | 3747778..3748439 | Replicon | chromosome |
Accession | NZ_CP026525 | ||
Organism | Sinorhizobium meliloti strain AK21 |
Toxin (Protein)
Gene name | vapC | Uniprot ID | H0G400 |
Locus tag | C3L21_RS18385 | Protein ID | WP_003531794.1 |
Coordinates | 3747778..3748182 (-) | Length | 135 a.a. |
Antitoxin (Protein)
Gene name | vapB | Uniprot ID | H0G3Z9 |
Locus tag | C3L21_RS18390 | Protein ID | WP_003531793.1 |
Coordinates | 3748179..3748439 (-) | Length | 87 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
C3L21_RS18370 | 3743374..3744486 | + | 1113 | WP_003535893.1 | 3-isopropylmalate dehydrogenase | - |
C3L21_RS18375 | 3744615..3745322 | + | 708 | WP_127521406.1 | phosphatase PAP2 family protein | - |
C3L21_RS18380 | 3745423..3747312 | - | 1890 | WP_003535895.1 | MHS family MFS transporter | - |
C3L21_RS18385 | 3747778..3748182 | - | 405 | WP_003531794.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
C3L21_RS18390 | 3748179..3748439 | - | 261 | WP_003531793.1 | AbrB/MazE/SpoVT family DNA-binding domain-containing protein | Antitoxin |
C3L21_RS18400 | 3748852..3749886 | + | 1035 | WP_003531790.1 | aspartate-semialdehyde dehydrogenase | - |
C3L21_RS18405 | 3750059..3750880 | + | 822 | WP_003531785.1 | lytic transglycosylase family protein | - |
C3L21_RS18410 | 3751227..3751910 | - | 684 | WP_010970569.1 | carbonic anhydrase | - |
C3L21_RS18415 | 3752084..3752965 | - | 882 | WP_015008003.1 | pyridoxal kinase PdxY | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 135 a.a. Molecular weight: 14480.69 Da Isoelectric Point: 6.7257
>T95049 WP_003531794.1 NZ_CP026525:c3748182-3747778 [Sinorhizobium meliloti]
VISHILDTSAVIALIGRKSDALVTRVLHSPQGIIGLPSVVAYELYFGAQKSAKAQHNLETLRLLMADFPILDFDRNDAFV
AGEIRAALAAKGTPIGPYDVLIAGQAKARGLTLVTNNVGEFNRVENLRVEDWSL
VISHILDTSAVIALIGRKSDALVTRVLHSPQGIIGLPSVVAYELYFGAQKSAKAQHNLETLRLLMADFPILDFDRNDAFV
AGEIRAALAAKGTPIGPYDVLIAGQAKARGLTLVTNNVGEFNRVENLRVEDWSL
Download Length: 405 bp
>T95049 NZ_CP026525:c3748182-3747778 [Sinorhizobium meliloti]
GTGATCTCCCATATTCTCGACACCAGCGCCGTCATCGCTTTGATCGGGCGCAAATCGGATGCATTGGTCACCCGTGTACT
CCATAGCCCTCAGGGCATTATCGGGCTCCCGTCGGTCGTCGCGTATGAACTCTATTTTGGAGCGCAGAAAAGCGCGAAGG
CCCAACACAATCTCGAAACCCTGCGTTTGTTGATGGCGGATTTTCCGATCCTCGACTTCGACCGGAACGATGCCTTTGTC
GCAGGCGAGATCCGGGCCGCCCTTGCCGCGAAGGGTACGCCCATCGGACCTTATGACGTGCTGATTGCGGGACAGGCCAA
AGCCCGTGGATTGACGCTCGTCACCAACAATGTCGGCGAGTTCAATAGGGTTGAGAACCTGCGCGTGGAGGATTGGTCGC
TCTAG
GTGATCTCCCATATTCTCGACACCAGCGCCGTCATCGCTTTGATCGGGCGCAAATCGGATGCATTGGTCACCCGTGTACT
CCATAGCCCTCAGGGCATTATCGGGCTCCCGTCGGTCGTCGCGTATGAACTCTATTTTGGAGCGCAGAAAAGCGCGAAGG
CCCAACACAATCTCGAAACCCTGCGTTTGTTGATGGCGGATTTTCCGATCCTCGACTTCGACCGGAACGATGCCTTTGTC
GCAGGCGAGATCCGGGCCGCCCTTGCCGCGAAGGGTACGCCCATCGGACCTTATGACGTGCTGATTGCGGGACAGGCCAA
AGCCCGTGGATTGACGCTCGTCACCAACAATGTCGGCGAGTTCAATAGGGTTGAGAACCTGCGCGTGGAGGATTGGTCGC
TCTAG
Antitoxin
Download Length: 87 a.a. Molecular weight: 9913.20 Da Isoelectric Point: 5.1253
>AT95049 WP_003531793.1 NZ_CP026525:c3748439-3748179 [Sinorhizobium meliloti]
MPHLARVFQSGNSQAVRLPKEFRFNVDRVEITQEGDALILRPHVEQGEQWSSLKAALARGMSEDFMMCGREQPEQQDRPE
LDAVFR
MPHLARVFQSGNSQAVRLPKEFRFNVDRVEITQEGDALILRPHVEQGEQWSSLKAALARGMSEDFMMCGREQPEQQDRPE
LDAVFR
Download Length: 261 bp
>AT95049 NZ_CP026525:c3748439-3748179 [Sinorhizobium meliloti]
ATGCCCCATCTTGCACGGGTGTTCCAGTCCGGAAATTCGCAGGCCGTCCGCCTGCCTAAGGAATTCCGCTTCAACGTCGA
TCGCGTCGAAATCACGCAGGAAGGCGACGCGCTCATTCTCCGCCCGCACGTCGAGCAAGGCGAGCAGTGGTCATCGCTGA
AGGCGGCACTTGCCCGTGGCATGAGTGAAGACTTCATGATGTGCGGGCGCGAGCAGCCGGAACAGCAGGATCGGCCGGAA
CTCGACGCGGTATTTCGGTGA
ATGCCCCATCTTGCACGGGTGTTCCAGTCCGGAAATTCGCAGGCCGTCCGCCTGCCTAAGGAATTCCGCTTCAACGTCGA
TCGCGTCGAAATCACGCAGGAAGGCGACGCGCTCATTCTCCGCCCGCACGTCGAGCAAGGCGAGCAGTGGTCATCGCTGA
AGGCGGCACTTGCCCGTGGCATGAGTGAAGACTTCATGATGTGCGGGCGCGAGCAGCCGGAACAGCAGGATCGGCCGGAA
CTCGACGCGGTATTTCGGTGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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