Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1924183..1924328 | Replicon | chromosome |
| Accession | NZ_CP026495 | ||
| Organism | Klebsiella pneumoniae strain 616 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1924219..1924321 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1924183..1924328 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2861_RS09565 | 1919313..1921373 | + | 2061 | WP_004148850.1 | oligopeptidase B | - |
| C2861_RS09570 | 1921377..1922036 | - | 660 | WP_032435029.1 | exodeoxyribonuclease X | - |
| C2861_RS09575 | 1922115..1922345 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| C2861_RS09580 | 1922458..1922832 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| C2861_RS09585 | 1922836..1923705 | + | 870 | WP_032435031.1 | copper homeostasis membrane protein CopD | - |
| C2861_RS09590 | 1923722..1924060 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1924183..1924328 | - | 146 | - | - | Antitoxin |
| - | 1924219..1924321 | + | 103 | - | - | Toxin |
| C2861_RS26835 | 1924696..1924839 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| C2861_RS09600 | 1924944..1925912 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| C2861_RS09605 | 1926069..1926722 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| C2861_RS09610 | 1926719..1926910 | - | 192 | WP_002911395.1 | YebW family protein | - |
| C2861_RS09615 | 1927008..1927247 | - | 240 | WP_002911393.1 | YebV family protein | - |
| C2861_RS09620 | 1927363..1928796 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T95017 NZ_CP026495:1924219-1924321 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT95017 NZ_CP026495:c1924328-1924183 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
