Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) ccdAB/CcdA(antitoxin)
Location 175350..175875 Replicon plasmid pHS13-1-IncF
Accession NZ_CP026494
Organism Escherichia coli strain HS13-1

Toxin (Protein)


Gene name ccdB Uniprot ID S1PFV8
Locus tag C3K24_RS28935 Protein ID WP_001159871.1
Coordinates 175350..175655 (-) Length 102 a.a.

Antitoxin (Protein)


Gene name ccdA Uniprot ID H9TJP1
Locus tag C3K24_RS28940 Protein ID WP_000813630.1
Coordinates 175657..175875 (-) Length 73 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C3K24_RS28920 171306..172511 - 1206 WP_001442122.1 AAA family ATPase -
C3K24_RS28925 173132..173863 + 732 WP_000504262.1 replication initiation protein -
C3K24_RS28930 174543..175349 - 807 WP_021543129.1 site-specific integrase -
C3K24_RS28935 175350..175655 - 306 WP_001159871.1 type II toxin-antitoxin system toxin CcdB Toxin
C3K24_RS28940 175657..175875 - 219 WP_000813630.1 type II toxin-antitoxin system antitoxin CcdA Antitoxin
C3K24_RS28950 176441..176953 + 513 WP_000151784.1 hypothetical protein -
C3K24_RS28955 176987..178120 - 1134 WP_000545987.1 DUF3800 domain-containing protein -
C3K24_RS28960 178287..179060 - 774 WP_000905949.1 hypothetical protein -
C3K24_RS28965 179073..179573 - 501 WP_000528932.1 hypothetical protein -
C3K24_RS28970 179838..180068 + 231 WP_001261278.1 AbrB/MazE/SpoVT family DNA-binding domain-containing protein -
C3K24_RS28975 180065..180481 + 417 WP_001034046.1 type II toxin-antitoxin system VapC family toxin -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Conjugative plasmid sitABCD / tet(A) iroB / iroC / iroD / iroE / iroN / vat / iutA / iucD / iucC / iucB / iucA 1..201203 201203


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin CcdB

(2-100)

Antitoxin

Post-segregation antitoxin CcdA

(2-72)


Sequences

Toxin        


Download         Length: 102 a.a.        Molecular weight: 11692.49 Da        Isoelectric Point: 6.4674

>T95011 WP_001159871.1 NZ_CP026494:c175655-175350 [Escherichia coli]
MQFKVYTYKRESRYRLFVDVQSDIIDTPGRRMVIPLASARLLSDKVSRELYPVVHVGDESWRMMTTDMASVPVSVIGEEV
ADLSHRENDIKNAINLMFWGI

Download         Length: 306 bp

>T95011 NZ_CP026494:c175655-175350 [Escherichia coli]
ATGCAGTTTAAGGTTTACACCTATAAAAGAGAGAGCCGTTATCGTCTGTTTGTGGATGTCCAGAGTGACATTATTGACAC
GCCCGGGCGACGGATGGTGATCCCCCTGGCCAGTGCACGTCTGTTGTCAGATAAGGTCTCCCGTGAGCTTTACCCGGTGG
TGCATGTCGGGGATGAAAGCTGGCGCATGATGACCACCGATATGGCCAGTGTGCCGGTCTCCGTTATCGGGGAGGAAGTG
GCTGATCTCAGCCACCGAGAAAATGACATCAAAAATGCCATTAACCTGATGTTCTGGGGAATATAA

Antitoxin


Download         Length: 73 a.a.        Molecular weight: 8354.27 Da        Isoelectric Point: 4.5203

>AT95011 WP_000813630.1 NZ_CP026494:c175875-175657 [Escherichia coli]
MKQRITVTVDSDSYQLLKAYDVNISGLVSTTLQNEARRLRAERWQAENQEGMAEVARFIEMNGSFADENRDW

Download         Length: 219 bp

>AT95011 NZ_CP026494:c175875-175657 [Escherichia coli]
ATGAAGCAGCGCATTACAGTCACCGTCGACAGTGACAGCTATCAGTTGCTCAAGGCATATGATGTCAATATCTCCGGGCT
GGTAAGCACCACCCTGCAGAATGAAGCCCGTCGTCTGCGTGCCGAACGCTGGCAGGCAGAAAATCAGGAAGGGATGGCTG
AGGTCGCCCGGTTTATTGAAATGAACGGCTCTTTTGCCGACGAGAACAGGGACTGGTGA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A829CCE8

Antitoxin

Source ID Structure
AlphaFold DB A0A829CEF5

References