Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 570677..570945 | Replicon | chromosome |
| Accession | NZ_CP026491 | ||
| Organism | Escherichia coli strain HS13-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 570715..570817 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 570677..570945 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3K24_RS03055 | 567834..569273 | + | 1440 | WP_001350670.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C3K24_RS03060 | 569391..569627 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C3K24_RS03065 | 569732..569923 | + | 192 | WP_001296140.1 | YebW family protein | - |
| C3K24_RS03070 | 569924..570580 | - | 657 | WP_000812741.1 | protein-serine/threonine phosphatase | - |
| - | 570677..570945 | + | 269 | - | - | Antitoxin |
| - | 570715..570817 | - | 103 | - | - | Toxin |
| C3K24_RS03075 | 570975..571316 | - | 342 | WP_000984819.1 | YebY family protein | - |
| C3K24_RS03080 | 571329..572201 | - | 873 | WP_000879320.1 | copper homeostasis membrane protein CopD | - |
| C3K24_RS03085 | 572205..572579 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C3K24_RS03090 | 572718..572948 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C3K24_RS03095 | 573050..573706 | + | 657 | WP_000011664.1 | carbon-nitrogen hydrolase family protein | - |
| C3K24_RS03100 | 573729..574391 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T94973 NZ_CP026491:c570817-570715 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT94973 NZ_CP026491:570677-570945 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
