Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2098449..2098720 | Replicon | chromosome |
| Accession | NZ_CP026473 | ||
| Organism | Escherichia coli strain KBN10P04869 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2098579..2098682 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2098449..2098720 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YKEC1_RS10765 | 2095004..2095666 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| YKEC1_RS10770 | 2095690..2096346 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| YKEC1_RS10775 | 2096448..2096678 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| YKEC1_RS10780 | 2096817..2097191 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| YKEC1_RS10785 | 2097195..2098067 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| YKEC1_RS10790 | 2098080..2098421 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2098449..2098720 | - | 272 | - | - | Antitoxin |
| - | 2098579..2098682 | + | 104 | - | - | Toxin |
| YKEC1_RS10795 | 2098817..2099473 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| YKEC1_RS10800 | 2099474..2099665 | - | 192 | WP_001296140.1 | YebW family protein | - |
| YKEC1_RS10805 | 2099770..2100006 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| YKEC1_RS10810 | 2100124..2101563 | - | 1440 | WP_000057023.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T94951 NZ_CP026473:2098579-2098682 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT94951 NZ_CP026473:c2098720-2098449 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
