Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 267045..267316 | Replicon | chromosome |
| Accession | NZ_CP026399 | ||
| Organism | Escherichia coli strain ECONIH4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 267175..267278 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 267045..267316 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3F40_RS01440 | 263600..264262 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C3F40_RS01445 | 264286..264942 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| C3F40_RS01450 | 265044..265274 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C3F40_RS01455 | 265413..265787 | + | 375 | WP_000168738.1 | CopC domain-containing protein YobA | - |
| C3F40_RS01460 | 265791..266663 | + | 873 | WP_000879286.1 | copper homeostasis membrane protein CopD | - |
| C3F40_RS01465 | 266676..267017 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 267045..267316 | - | 272 | - | - | Antitoxin |
| - | 267175..267278 | + | 104 | - | - | Toxin |
| C3F40_RS01470 | 267413..268069 | + | 657 | WP_000812740.1 | protein-serine/threonine phosphatase | - |
| C3F40_RS01475 | 268070..268261 | - | 192 | WP_001313035.1 | YebW family protein | - |
| C3F40_RS01480 | 268366..268602 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C3F40_RS01485 | 268720..270159 | - | 1440 | WP_001383086.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T94797 NZ_CP026399:267175-267278 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT94797 NZ_CP026399:c267316-267045 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
