Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4952773..4952918 | Replicon | chromosome |
| Accession | NZ_CP026392 | ||
| Organism | Klebsiella pneumoniae strain KPNIH48 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4952809..4952911 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4952773..4952918 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3F39_RS25455 | 4947903..4949963 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| C3F39_RS25460 | 4949967..4950626 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| C3F39_RS25465 | 4950705..4950935 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| C3F39_RS25470 | 4951048..4951422 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| C3F39_RS25475 | 4951426..4952295 | + | 870 | WP_064172307.1 | copper homeostasis membrane protein CopD | - |
| C3F39_RS25480 | 4952312..4952650 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4952773..4952918 | - | 146 | - | - | Antitoxin |
| - | 4952809..4952911 | + | 103 | - | - | Toxin |
| C3F39_RS33775 | 4953285..4953428 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| C3F39_RS25490 | 4953533..4954501 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| C3F39_RS25495 | 4954658..4955311 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| C3F39_RS25500 | 4955308..4955499 | - | 192 | WP_002911395.1 | YebW family protein | - |
| C3F39_RS25505 | 4955597..4955836 | - | 240 | WP_002911393.1 | YebV family protein | - |
| C3F39_RS25510 | 4955952..4957385 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4881027..4970314 | 89287 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T94779 NZ_CP026392:4952809-4952911 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT94779 NZ_CP026392:c4952918-4952773 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
