Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2526567..2526707 | Replicon | chromosome |
| Accession | NZ_CP026383 | ||
| Organism | Serratia sp. SSNIH1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2526611..2526707 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2526567..2526707 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C3F38_RS12150 | 2521766..2522191 | + | 426 | WP_038875849.1 | RNA polymerase-binding protein DksA | - |
| C3F38_RS12155 | 2522386..2523339 | + | 954 | WP_038875880.1 | prolyl aminopeptidase | - |
| C3F38_RS12160 | 2523373..2523603 | - | 231 | WP_033638067.1 | DNA polymerase III subunit theta | - |
| C3F38_RS12165 | 2523948..2524466 | + | 519 | WP_038875847.1 | non-heme ferritin | - |
| C3F38_RS12170 | 2524758..2525174 | + | 417 | WP_047727770.1 | CopC domain-containing protein YobA | - |
| C3F38_RS12175 | 2525177..2526058 | + | 882 | WP_055317668.1 | copper homeostasis membrane protein CopD | - |
| C3F38_RS12180 | 2526128..2526469 | + | 342 | WP_025302452.1 | YebY family protein | - |
| - | 2526567..2526707 | - | 141 | - | - | Antitoxin |
| - | 2526611..2526707 | + | 97 | - | - | Toxin |
| C3F38_RS12185 | 2526786..2527255 | - | 470 | Protein_2326 | tyrosine-type recombinase/integrase | - |
| C3F38_RS12190 | 2527372..2527514 | + | 143 | Protein_2327 | DUF1367 family protein | - |
| C3F38_RS26170 | 2527754..2528563 | - | 810 | WP_146052611.1 | hypothetical protein | - |
| C3F38_RS12195 | 2529170..2529577 | + | 408 | WP_055312139.1 | hypothetical protein | - |
| C3F38_RS12200 | 2529713..2530063 | + | 351 | WP_055317723.1 | DUF4377 domain-containing protein | - |
| C3F38_RS12205 | 2530114..2530416 | - | 303 | WP_049202506.1 | hypothetical protein | - |
| C3F38_RS12210 | 2530416..2531258 | - | 843 | WP_055312138.1 | DUF4225 domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 97 bp
>T94750 NZ_CP026383:2526611-2526707 [Serratia sp. SSNIH1]
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
AACAAGCCCTGCATTAAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTAGACCGAATATAGGAATC
GTATTCGGTCTTTTTTT
Antitoxin
Download Length: 141 bp
>AT94750 NZ_CP026383:c2526707-2526567 [Serratia sp. SSNIH1]
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
AAAAAAAGACCGAATACGATTCCTATATTCGGTCTAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCAT
TTAATGCAGGGCTTGTTCAGCCGTGCACTTTAAGAGTAGCCTACCGCGCCAGTTTTGCCAG
