Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1977883..1978030 | Replicon | chromosome |
| Accession | NZ_CP026368 | ||
| Organism | Klebsiella quasipneumoniae strain A708 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1977924..1978026 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1977883..1978030 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2767_RS09845 | 1973018..1975078 | + | 2061 | WP_112201428.1 | oligopeptidase B | - |
| C2767_RS09850 | 1975082..1975741 | - | 660 | WP_023290237.1 | exodeoxyribonuclease X | - |
| C2767_RS09855 | 1975820..1976050 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| C2767_RS09860 | 1976163..1976537 | + | 375 | WP_032453372.1 | CopC domain-containing protein YobA | - |
| C2767_RS09865 | 1976541..1977410 | + | 870 | WP_050533810.1 | copper homeostasis membrane protein CopD | - |
| C2767_RS09870 | 1977427..1977765 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1977883..1978030 | - | 148 | - | - | Antitoxin |
| - | 1977924..1978026 | + | 103 | - | - | Toxin |
| C2767_RS09880 | 1978405..1978548 | - | 144 | WP_032425946.1 | Ecr family regulatory small membrane protein | - |
| C2767_RS09885 | 1978653..1979621 | - | 969 | WP_181573388.1 | VirK/YbjX family protein | - |
| C2767_RS09890 | 1979778..1980431 | + | 654 | WP_023290232.1 | protein-serine/threonine phosphatase | - |
| C2767_RS09895 | 1980428..1980619 | - | 192 | WP_002911395.1 | YebW family protein | - |
| C2767_RS09900 | 1980717..1980956 | - | 240 | WP_002911393.1 | YebV family protein | - |
| C2767_RS09905 | 1981072..1982502 | - | 1431 | WP_112201429.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T94718 NZ_CP026368:1977924-1978026 [Klebsiella quasipneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT94718 NZ_CP026368:c1978030-1977883 [Klebsiella quasipneumoniae]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGTCTGCG
