Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) relB-yefM/YoeB-RelB
Location 110126..110636 Replicon plasmid unnamed 1
Accession NZ_CP026317
Organism Vibrio campbellii strain BoB-90

Toxin (Protein)


Gene name relB Uniprot ID -
Locus tag C1N51_RS27755 Protein ID WP_103412156.1
Coordinates 110126..110389 (-) Length 88 a.a.

Antitoxin (Protein)


Gene name yefM Uniprot ID -
Locus tag C1N51_RS27760 Protein ID WP_103412157.1
Coordinates 110382..110636 (-) Length 85 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C1N51_RS27725 105406..106650 - 1245 WP_103411034.1 IS91 family transposase -
C1N51_RS27730 106669..106974 - 306 WP_103411033.1 hypothetical protein -
C1N51_RS27735 107511..108491 + 981 WP_103412184.1 IS5 family transposase -
C1N51_RS27740 108511..108879 - 369 WP_103412153.1 sel1 repeat family protein -
C1N51_RS27750 109474..110082 - 609 WP_103412155.1 hypothetical protein -
C1N51_RS27755 110126..110389 - 264 WP_103412156.1 Txe/YoeB family addiction module toxin Toxin
C1N51_RS27760 110382..110636 - 255 WP_103412157.1 type II toxin-antitoxin system prevent-host-death family antitoxin Antitoxin
C1N51_RS27775 112352..113332 + 981 WP_103412184.1 IS5 family transposase -
C1N51_RS27780 113374..113613 - 240 Protein_111 transposase -
C1N51_RS27785 113719..114093 + 375 Protein_112 transposase -
C1N51_RS27790 114106..114336 + 231 Protein_113 IS1 family transposase -
C1N51_RS27795 114363..114488 - 126 Protein_114 IS1 family transposase -
C1N51_RS27800 114555..114673 - 119 Protein_115 IS5/IS1182 family transposase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)
- inside Non-Mobilizable plasmid - - 1..194647 194647


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Toxin YoeB

(6-87)

Antitoxin

Type II toxin-antitoxin system, antitoxin Phd/YefM

(1-73)


Sequences

Toxin        


Download         Length: 88 a.a.        Molecular weight: 10371.70 Da        Isoelectric Point: 8.8660

>T93811 WP_103412156.1 NZ_CP026317:c110389-110126 [Vibrio campbellii]
MSSRLLSWTNEAWDDYLYWQSQDKKTLKRVNKLISDAKRSPFEGIGKPEPLRENLSGFWSRRIDDVNRLVYAVNDESLTI
ISCRYHY

Download         Length: 264 bp

>T93811 NZ_CP026317:c110389-110126 [Vibrio campbellii]
ATGAGTAGTCGATTATTGAGTTGGACTAATGAAGCTTGGGATGACTACTTGTATTGGCAATCTCAGGACAAGAAAACGCT
TAAGCGGGTCAACAAGCTCATTTCAGATGCAAAGCGGTCACCGTTTGAGGGGATTGGAAAACCAGAACCACTAAGAGAAA
ACCTTTCCGGATTCTGGTCTAGGCGGATTGATGATGTTAATAGATTGGTCTACGCTGTAAACGACGAATCGTTAACAATA
ATTTCTTGTAGATACCATTATTAA

Antitoxin


Download         Length: 85 a.a.        Molecular weight: 9654.70 Da        Isoelectric Point: 4.5983

>AT93811 WP_103412157.1 NZ_CP026317:c110636-110382 [Vibrio campbellii]
MRIVSFTEARNNLKTILDTVVDDADTTVITRRDSEDAVVMSLDYYNSLMETVHLLRSPNNAEHLNRSIEQYRSGHTTARD
LIDE

Download         Length: 255 bp

>AT93811 NZ_CP026317:c110636-110382 [Vibrio campbellii]
ATGCGTATTGTTTCATTCACTGAAGCTAGAAATAATCTAAAGACGATTCTAGACACCGTTGTTGACGATGCAGACACAAC
AGTGATCACGCGTCGTGATTCAGAAGATGCAGTTGTCATGTCATTAGACTACTACAATAGTTTGATGGAAACGGTTCACT
TGCTGCGTTCACCAAACAATGCTGAACACTTAAACCGGTCAATCGAGCAATACCGTTCTGGTCACACTACCGCAAGAGAC
CTGATCGATGAGTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure

Antitoxin

Source ID Structure

References