Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 6026993..6027161 | Replicon | chromosome |
| Accession | NZ_CP026275 | ||
| Organism | Klebsiella oxytoca strain KONIH5 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 6027000..6027103 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 6026993..6027161 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2U46_RS29355 | 6022267..6022785 | + | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
| C2U46_RS29360 | 6022804..6023568 | + | 765 | WP_032694916.1 | molecular chaperone | - |
| C2U46_RS29365 | 6023571..6025901 | + | 2331 | WP_032694917.1 | fimbrial biogenesis outer membrane usher protein | - |
| C2U46_RS29370 | 6025916..6026875 | + | 960 | WP_025106131.1 | spore coat U domain-containing protein | - |
| - | 6026993..6027161 | + | 169 | - | - | Antitoxin |
| - | 6027000..6027103 | - | 104 | - | - | Toxin |
| C2U46_RS29375 | 6027260..6027598 | - | 339 | WP_004103344.1 | YebY family protein | - |
| C2U46_RS29380 | 6027615..6028484 | - | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| C2U46_RS29385 | 6028489..6028863 | - | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| C2U46_RS29390 | 6028999..6029229 | + | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| C2U46_RS29395 | 6029308..6029967 | + | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| C2U46_RS29400 | 6029974..6032034 | - | 2061 | WP_014229840.1 | oligopeptidase B | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T93789 NZ_CP026275:c6027103-6027000 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT93789 NZ_CP026275:6026993-6027161 [Klebsiella oxytoca]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
