Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2340401..2340569 | Replicon | chromosome |
| Accession | NZ_CP026269 | ||
| Organism | Klebsiella oxytoca strain KONIH4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2340459..2340562 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2340401..2340569 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2U44_RS11680 | 2335528..2337588 | + | 2061 | WP_042945478.1 | oligopeptidase B | - |
| C2U44_RS11685 | 2337595..2338254 | - | 660 | WP_014229839.1 | exodeoxyribonuclease X | - |
| C2U44_RS11690 | 2338333..2338563 | - | 231 | WP_004103351.1 | DNA polymerase III subunit theta | - |
| C2U44_RS11695 | 2338699..2339073 | + | 375 | WP_014229838.1 | CopC domain-containing protein YobA | - |
| C2U44_RS11700 | 2339078..2339947 | + | 870 | WP_014229837.1 | copper homeostasis membrane protein CopD | - |
| C2U44_RS11705 | 2339964..2340302 | + | 339 | WP_004103344.1 | YebY family protein | - |
| - | 2340401..2340569 | - | 169 | - | - | Antitoxin |
| - | 2340459..2340562 | + | 104 | - | - | Toxin |
| C2U44_RS11710 | 2340687..2341646 | - | 960 | WP_042945476.1 | spore coat U domain-containing protein | - |
| C2U44_RS11715 | 2341661..2343991 | - | 2331 | WP_042945474.1 | fimbrial biogenesis outer membrane usher protein | - |
| C2U44_RS11720 | 2343994..2344758 | - | 765 | WP_042945473.1 | molecular chaperone | - |
| C2U44_RS11725 | 2344777..2345295 | - | 519 | WP_004852079.1 | spore coat U domain-containing protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T93764 NZ_CP026269:2340459-2340562 [Klebsiella oxytoca]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 169 bp
>AT93764 NZ_CP026269:c2340569-2340401 [Klebsiella oxytoca]
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
AACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCCTTATAAGAATAGTTTACCGTGTCAGGTTTTCCAGTCCGCGACAAAAGTG
GACGAATAA
