Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2842642..2842784 | Replicon | chromosome |
| Accession | NZ_CP026235 | ||
| Organism | Citrobacter freundii complex sp. CFNIH3 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2842646..2842749 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2842642..2842784 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2U38_RS14295 | 2838910..2839950 | + | 1041 | WP_049040226.1 | recombinase RecT | - |
| C2U38_RS14300 | 2839985..2840329 | + | 345 | WP_049040227.1 | hypothetical protein | - |
| C2U38_RS14305 | 2840322..2840948 | + | 627 | WP_049040228.1 | morphogenetic protein | - |
| C2U38_RS14310 | 2840935..2841177 | + | 243 | WP_005121071.1 | DUF4060 family protein | - |
| C2U38_RS14315 | 2841242..2841514 | + | 273 | WP_049040229.1 | excisionase | - |
| C2U38_RS14320 | 2841483..2842568 | + | 1086 | WP_049040230.1 | phage integrase Arm DNA-binding domain-containing protein | - |
| - | 2842642..2842784 | + | 143 | - | - | Antitoxin |
| - | 2842646..2842749 | - | 104 | - | - | Toxin |
| C2U38_RS14325 | 2842905..2843243 | - | 339 | WP_003833793.1 | YebY family protein | - |
| C2U38_RS14330 | 2843264..2844136 | - | 873 | WP_103283918.1 | copper homeostasis membrane protein CopD | - |
| C2U38_RS14335 | 2844140..2844514 | - | 375 | WP_103283919.1 | CopC domain-containing protein YobA | - |
| C2U38_RS14340 | 2844658..2844888 | + | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| C2U38_RS14345 | 2844995..2845651 | + | 657 | WP_016156222.1 | carbon-nitrogen hydrolase family protein | - |
| C2U38_RS14350 | 2845675..2846337 | + | 663 | WP_016152773.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 2781637..2879621 | 97984 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T93736 NZ_CP026235:c2842749-2842646 [Citrobacter freundii complex sp. CFNIH3]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 143 bp
>AT93736 NZ_CP026235:2842642-2842784 [Citrobacter freundii complex sp. CFNIH3]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
