Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | parDE/ParE-YefM |
Location | 2459650..2460221 | Replicon | chromosome |
Accession | NZ_CP026235 | ||
Organism | Citrobacter freundii complex sp. CFNIH3 |
Toxin (Protein)
Gene name | parE | Uniprot ID | A0A2I8S8S5 |
Locus tag | C2U38_RS12270 | Protein ID | WP_011918375.1 |
Coordinates | 2459650..2459961 (-) | Length | 104 a.a. |
Antitoxin (Protein)
Gene name | parD | Uniprot ID | A0A1Z3MW28 |
Locus tag | C2U38_RS12275 | Protein ID | WP_011787805.1 |
Coordinates | 2459961..2460221 (-) | Length | 87 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
C2U38_RS12260 | 2455502..2456491 | + | 990 | Protein_2300 | efflux MFS transporter YdeE | - |
C2U38_RS12265 | 2456546..2459626 | - | 3081 | WP_011787830.1 | Tn3 family transposase | - |
C2U38_RS12270 | 2459650..2459961 | - | 312 | WP_011918375.1 | type II toxin-antitoxin system RelE/ParE family toxin | Toxin |
C2U38_RS12275 | 2459961..2460221 | - | 261 | WP_011787805.1 | type II toxin-antitoxin system Phd/YefM family antitoxin | Antitoxin |
C2U38_RS12280 | 2460391..2461011 | + | 621 | WP_011787804.1 | recombinase family protein | - |
C2U38_RS12285 | 2461129..2461461 | - | 333 | WP_011787803.1 | TraR/DksA C4-type zinc finger protein | - |
C2U38_RS12290 | 2461552..2462406 | - | 855 | WP_011787802.1 | universal stress protein | - |
C2U38_RS12295 | 2462441..2463931 | - | 1491 | WP_011787801.1 | SulP family inorganic anion transporter | - |
C2U38_RS12300 | 2464430..2464630 | + | 201 | Protein_2308 | efflux MFS transporter YdeE | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 a.a. Molecular weight: 11862.70 Da Isoelectric Point: 8.5341
>T93735 WP_011918375.1 NZ_CP026235:c2459961-2459650 [Citrobacter freundii complex sp. CFNIH3]
MPVTYHLTPDAQSDLIGIHRFTLAQWGTTQSKTYLSGLRQTIQLLAETPTLGKNRPEVRMNVFSFPYSSHVIYYIQHEHQ
FVVFGILHKSMVPLAHLAEREII
MPVTYHLTPDAQSDLIGIHRFTLAQWGTTQSKTYLSGLRQTIQLLAETPTLGKNRPEVRMNVFSFPYSSHVIYYIQHEHQ
FVVFGILHKSMVPLAHLAEREII
Download Length: 312 bp
>T93735 NZ_CP026235:c2459961-2459650 [Citrobacter freundii complex sp. CFNIH3]
ATGCCGGTAACTTATCATTTAACGCCCGATGCACAATCTGATCTGATAGGTATTCACCGCTTTACGTTAGCCCAATGGGG
AACGACTCAGTCGAAGACCTATTTATCAGGACTTAGACAAACGATTCAACTGCTGGCTGAAACACCCACCCTTGGGAAAA
ATAGACCCGAGGTACGCATGAATGTGTTTAGCTTCCCTTATTCAAGTCATGTCATCTATTACATCCAACATGAGCATCAA
TTCGTTGTATTTGGGATCTTACATAAAAGTATGGTTCCACTTGCACATCTCGCGGAGCGGGAAATTATTTGA
ATGCCGGTAACTTATCATTTAACGCCCGATGCACAATCTGATCTGATAGGTATTCACCGCTTTACGTTAGCCCAATGGGG
AACGACTCAGTCGAAGACCTATTTATCAGGACTTAGACAAACGATTCAACTGCTGGCTGAAACACCCACCCTTGGGAAAA
ATAGACCCGAGGTACGCATGAATGTGTTTAGCTTCCCTTATTCAAGTCATGTCATCTATTACATCCAACATGAGCATCAA
TTCGTTGTATTTGGGATCTTACATAAAAGTATGGTTCCACTTGCACATCTCGCGGAGCGGGAAATTATTTGA
Antitoxin
Download Length: 87 a.a. Molecular weight: 9312.71 Da Isoelectric Point: 6.4546
>AT93735 WP_011787805.1 NZ_CP026235:c2460221-2459961 [Citrobacter freundii complex sp. CFNIH3]
MNTLSANEAKIHFGDLLLKAQQAPIQINKNGKPVAVVISADAYQSIETLKLHLLQSKAVKAITDIKMGNLVDGNTFFDEL
AAGQYD
MNTLSANEAKIHFGDLLLKAQQAPIQINKNGKPVAVVISADAYQSIETLKLHLLQSKAVKAITDIKMGNLVDGNTFFDEL
AAGQYD
Download Length: 261 bp
>AT93735 NZ_CP026235:c2460221-2459961 [Citrobacter freundii complex sp. CFNIH3]
ATGAACACTCTTTCAGCCAATGAAGCAAAAATTCACTTTGGAGATTTGTTGCTCAAAGCTCAACAAGCTCCAATCCAAAT
TAATAAAAATGGCAAGCCTGTGGCCGTTGTTATTTCAGCTGATGCATACCAAAGTATCGAGACACTAAAATTACATTTGC
TTCAATCCAAAGCGGTGAAAGCCATAACTGACATCAAAATGGGCAATTTGGTTGATGGTAATACCTTTTTTGATGAGCTG
GCCGCAGGGCAGTATGACTAA
ATGAACACTCTTTCAGCCAATGAAGCAAAAATTCACTTTGGAGATTTGTTGCTCAAAGCTCAACAAGCTCCAATCCAAAT
TAATAAAAATGGCAAGCCTGTGGCCGTTGTTATTTCAGCTGATGCATACCAAAGTATCGAGACACTAAAATTACATTTGC
TTCAATCCAAAGCGGTGAAAGCCATAACTGACATCAAAATGGGCAATTTGGTTGATGGTAATACCTTTTTTGATGAGCTG
GCCGCAGGGCAGTATGACTAA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
---|
Structures
Toxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A2I8S8S5 |
Antitoxin
Source | ID | Structure |
---|---|---|
AlphaFold DB | A0A1Z3MW28 |