Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | ykfI-yfjZ/CbtA-CbeA |
| Location | 545561..546240 | Replicon | chromosome |
| Accession | NZ_CP026235 | ||
| Organism | Citrobacter freundii complex sp. CFNIH3 | ||
Toxin (Protein)
| Gene name | ykfI | Uniprot ID | A0A2I8S1Q2 |
| Locus tag | C2U38_RS02730 | Protein ID | WP_074398812.1 |
| Coordinates | 545899..546240 (+) | Length | 114 a.a. |
Antitoxin (Protein)
| Gene name | yfjZ | Uniprot ID | A0A1B7JQF2 |
| Locus tag | C2U38_RS02725 | Protein ID | WP_064547036.1 |
| Coordinates | 545561..545878 (+) | Length | 106 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 538967..557043 | 18076 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 114 a.a. Molecular weight: 12850.68 Da Isoelectric Point: 8.0800
>T93727 WP_074398812.1 NZ_CP026235:545899-546240 [Citrobacter freundii complex sp. CFNIH3]
MKPQSATTSRAAKPCLSPVAVWQMLLTRLLEQHYGLTLNDTPFSDETVIQEHIDAGISLADAVNFLVEKYELVRIDRKGF
SWQEQSPYLRAFDILRARHATGLLRHSRNNTAI
MKPQSATTSRAAKPCLSPVAVWQMLLTRLLEQHYGLTLNDTPFSDETVIQEHIDAGISLADAVNFLVEKYELVRIDRKGF
SWQEQSPYLRAFDILRARHATGLLRHSRNNTAI
Download Length: 342 bp
>T93727 NZ_CP026235:545899-546240 [Citrobacter freundii complex sp. CFNIH3]
ATGAAACCTCAATCTGCAACAACTTCGCGGGCGGCGAAGCCTTGTCTGTCGCCCGTTGCAGTCTGGCAAATGCTACTGAC
ACGCCTGCTGGAACAACATTATGGCCTGACACTCAACGACACACCATTCAGTGATGAAACGGTAATTCAGGAACATATCG
ATGCCGGTATATCTTTGGCCGATGCCGTTAATTTTCTGGTGGAAAAGTACGAGCTGGTTCGAATAGATCGCAAGGGGTTT
AGCTGGCAGGAACAATCACCTTATCTTCGGGCCTTTGATATTCTGCGAGCGCGACATGCAACGGGTCTGTTACGACACAG
TCGTAACAACACGGCAATCTGA
ATGAAACCTCAATCTGCAACAACTTCGCGGGCGGCGAAGCCTTGTCTGTCGCCCGTTGCAGTCTGGCAAATGCTACTGAC
ACGCCTGCTGGAACAACATTATGGCCTGACACTCAACGACACACCATTCAGTGATGAAACGGTAATTCAGGAACATATCG
ATGCCGGTATATCTTTGGCCGATGCCGTTAATTTTCTGGTGGAAAAGTACGAGCTGGTTCGAATAGATCGCAAGGGGTTT
AGCTGGCAGGAACAATCACCTTATCTTCGGGCCTTTGATATTCTGCGAGCGCGACATGCAACGGGTCTGTTACGACACAG
TCGTAACAACACGGCAATCTGA
Antitoxin
Download Length: 106 a.a. Molecular weight: 11911.64 Da Isoelectric Point: 6.9463
>AT93727 WP_064547036.1 NZ_CP026235:545561-545878 [Citrobacter freundii complex sp. CFNIH3]
MSNITWGLRRDITPRLGARLVQEGNRLHYLADRASMTGKFSDAECQKLDEIFPHFISQMESMLTTGELNPLHVHCVTLYH
TGFTCEADTLGSCGYVYIAIYPTKR
MSNITWGLRRDITPRLGARLVQEGNRLHYLADRASMTGKFSDAECQKLDEIFPHFISQMESMLTTGELNPLHVHCVTLYH
TGFTCEADTLGSCGYVYIAIYPTKR
Download Length: 318 bp
>AT93727 NZ_CP026235:545561-545878 [Citrobacter freundii complex sp. CFNIH3]
ATGAGCAACATCACATGGGGCCTGCGGCGGGATATCACGCCACGTCTGGGAGCCCGTCTGGTGCAGGAGGGGAACCGGCT
GCATTATCTGGCTGACCGGGCCAGCATGACTGGCAAGTTCAGTGACGCCGAATGCCAGAAGCTGGATGAAATATTCCCGC
ACTTTATCAGCCAGATGGAATCGATGCTGACCACCGGTGAACTGAATCCCCTACACGTTCATTGCGTCACCCTGTACCAC
ACCGGTTTTACCTGCGAAGCCGACACCCTCGGCAGTTGCGGCTACGTATACATCGCCATTTACCCCACTAAGCGCTAA
ATGAGCAACATCACATGGGGCCTGCGGCGGGATATCACGCCACGTCTGGGAGCCCGTCTGGTGCAGGAGGGGAACCGGCT
GCATTATCTGGCTGACCGGGCCAGCATGACTGGCAAGTTCAGTGACGCCGAATGCCAGAAGCTGGATGAAATATTCCCGC
ACTTTATCAGCCAGATGGAATCGATGCTGACCACCGGTGAACTGAATCCCCTACACGTTCATTGCGTCACCCTGTACCAC
ACCGGTTTTACCTGCGAAGCCGACACCCTCGGCAGTTGCGGCTACGTATACATCGCCATTTACCCCACTAAGCGCTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
Structures
Toxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A2I8S1Q2 |
Antitoxin
| Source | ID | Structure |
|---|---|---|
| AlphaFold DB | A0A1B7JQF2 |