Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4213656..4213803 | Replicon | chromosome |
| Accession | NZ_CP026216 | ||
| Organism | Citrobacter sp. CFNIH10 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4213660..4213763 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4213656..4213803 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2U53_RS24265 | 4210764..4212203 | + | 1440 | WP_104446918.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C2U53_RS24270 | 4212318..4212554 | + | 237 | WP_161215572.1 | DUF1480 family protein | - |
| C2U53_RS24275 | 4212656..4212847 | + | 192 | WP_043000391.1 | YebW family protein | - |
| C2U53_RS24280 | 4212848..4213510 | - | 663 | WP_043000390.1 | protein-serine/threonine phosphatase | - |
| - | 4213656..4213803 | + | 148 | - | - | Antitoxin |
| - | 4213660..4213763 | - | 104 | - | - | Toxin |
| C2U53_RS24285 | 4213919..4214257 | - | 339 | WP_043000379.1 | YebY family protein | - |
| C2U53_RS24290 | 4214274..4215146 | - | 873 | WP_104446579.1 | copper homeostasis membrane protein CopD | - |
| C2U53_RS24295 | 4215149..4215523 | - | 375 | WP_044326804.1 | CopC domain-containing protein YobA | - |
| C2U53_RS24300 | 4215661..4215891 | + | 231 | WP_042318454.1 | DNA polymerase III subunit theta | - |
| C2U53_RS24305 | 4216000..4216662 | + | 663 | WP_104446580.1 | carbon-nitrogen hydrolase family protein | - |
| C2U53_RS24310 | 4216686..4217348 | + | 663 | WP_043000375.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 4205389..4283430 | 78041 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T93704 NZ_CP026216:c4213763-4213660 [Citrobacter sp. CFNIH10]
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 148 bp
>AT93704 NZ_CP026216:4213656-4213803 [Citrobacter sp. CFNIH10]
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
AGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTG
GCATTAATGCAGGCTAAGTCGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCTGCG
