Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4973834..4973979 | Replicon | chromosome |
| Accession | NZ_CP026177 | ||
| Organism | Klebsiella pneumoniae strain KPNIH50 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4973870..4973972 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4973834..4973979 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2U50_RS29395 | 4968964..4971024 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| C2U50_RS29400 | 4971028..4971687 | - | 660 | WP_021440386.1 | exodeoxyribonuclease X | - |
| C2U50_RS29405 | 4971766..4971996 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| C2U50_RS29410 | 4972109..4972483 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| C2U50_RS29415 | 4972487..4973356 | + | 870 | WP_064172307.1 | copper homeostasis membrane protein CopD | - |
| C2U50_RS29420 | 4973373..4973711 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 4973834..4973979 | - | 146 | - | - | Antitoxin |
| - | 4973870..4973972 | + | 103 | - | - | Toxin |
| C2U50_RS33000 | 4974346..4974489 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| C2U50_RS29430 | 4974594..4975562 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| C2U50_RS29435 | 4975719..4976372 | + | 654 | WP_004891053.1 | protein-serine/threonine phosphatase | - |
| C2U50_RS29440 | 4976369..4976560 | - | 192 | WP_002911395.1 | YebW family protein | - |
| C2U50_RS29445 | 4976658..4976897 | - | 240 | WP_002911393.1 | YebV family protein | - |
| C2U50_RS29450 | 4977013..4978446 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T93646 NZ_CP026177:4973870-4973972 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT93646 NZ_CP026177:c4973979-4973834 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
