Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1821195..1821340 | Replicon | chromosome |
| Accession | NZ_CP026164 | ||
| Organism | Klebsiella pneumoniae strain F81 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1821231..1821333 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1821195..1821340 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2M15_RS08955 | 1816325..1818385 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| C2M15_RS08960 | 1818389..1819048 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| C2M15_RS08965 | 1819127..1819357 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| C2M15_RS08970 | 1819470..1819844 | + | 375 | WP_048279882.1 | CopC domain-containing protein YobA | - |
| C2M15_RS08975 | 1819848..1820717 | + | 870 | WP_048279880.1 | copper homeostasis membrane protein CopD | - |
| C2M15_RS08980 | 1820734..1821072 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1821195..1821340 | - | 146 | - | - | Antitoxin |
| - | 1821231..1821333 | + | 103 | - | - | Toxin |
| C2M15_RS27635 | 1821708..1821851 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| C2M15_RS08990 | 1821956..1822924 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| C2M15_RS08995 | 1823081..1823734 | + | 654 | WP_009484457.1 | protein-serine/threonine phosphatase | - |
| C2M15_RS09000 | 1823731..1823922 | - | 192 | WP_002911395.1 | YebW family protein | - |
| C2M15_RS09005 | 1824020..1824259 | - | 240 | WP_002911393.1 | YebV family protein | - |
| C2M15_RS09010 | 1824375..1825808 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T93610 NZ_CP026164:1821231-1821333 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT93610 NZ_CP026164:c1821340-1821195 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
