Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1910205..1910350 | Replicon | chromosome |
| Accession | NZ_CP026160 | ||
| Organism | Klebsiella pneumoniae strain F93-1 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1910241..1910343 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1910205..1910350 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2M21_RS09595 | 1905335..1907395 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| C2M21_RS09600 | 1907399..1908058 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| C2M21_RS09605 | 1908137..1908367 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| C2M21_RS09610 | 1908480..1908854 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| C2M21_RS09615 | 1908858..1909727 | + | 870 | WP_023285313.1 | copper homeostasis membrane protein CopD | - |
| C2M21_RS09620 | 1909744..1910082 | + | 339 | WP_048982383.1 | YebY family protein | - |
| - | 1910205..1910350 | - | 146 | - | - | Antitoxin |
| - | 1910241..1910343 | + | 103 | - | - | Toxin |
| C2M21_RS27035 | 1910719..1910862 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| C2M21_RS09630 | 1910967..1911935 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| C2M21_RS09635 | 1912092..1912745 | + | 654 | WP_048982385.1 | protein-serine/threonine phosphatase | - |
| C2M21_RS09640 | 1912742..1912933 | - | 192 | WP_002911395.1 | YebW family protein | - |
| C2M21_RS09645 | 1913031..1913270 | - | 240 | WP_002911393.1 | YebV family protein | - |
| C2M21_RS09650 | 1913386..1914819 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T93571 NZ_CP026160:1910241-1910343 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT93571 NZ_CP026160:c1910350-1910205 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
