Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1879115..1879260 | Replicon | chromosome |
| Accession | NZ_CP026157 | ||
| Organism | Klebsiella pneumoniae strain F93-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1879151..1879253 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1879115..1879260 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2M12_RS09330 | 1874245..1876305 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| C2M12_RS09335 | 1876309..1876968 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| C2M12_RS09340 | 1877047..1877277 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| C2M12_RS09345 | 1877390..1877764 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| C2M12_RS09350 | 1877768..1878637 | + | 870 | WP_004175431.1 | copper homeostasis membrane protein CopD | - |
| C2M12_RS09355 | 1878654..1878992 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1879115..1879260 | - | 146 | - | - | Antitoxin |
| - | 1879151..1879253 | + | 103 | - | - | Toxin |
| C2M12_RS26215 | 1879628..1879771 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| C2M12_RS09365 | 1879876..1880844 | - | 969 | WP_074195444.1 | DUF535 family protein | - |
| C2M12_RS09370 | 1881001..1881654 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| C2M12_RS09375 | 1881651..1881842 | - | 192 | WP_002911395.1 | YebW family protein | - |
| C2M12_RS09380 | 1881940..1882179 | - | 240 | WP_002911393.1 | YebV family protein | - |
| C2M12_RS09385 | 1882295..1883728 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T93531 NZ_CP026157:1879151-1879253 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT93531 NZ_CP026157:c1879260-1879115 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
