Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1989310..1989455 | Replicon | chromosome |
| Accession | NZ_CP026155 | ||
| Organism | Klebsiella pneumoniae strain B12(AN) | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1989346..1989448 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1989310..1989455 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2M23_RS09860 | 1984440..1986500 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| C2M23_RS09865 | 1986504..1987163 | - | 660 | WP_032425085.1 | exodeoxyribonuclease X | - |
| C2M23_RS09870 | 1987242..1987472 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| C2M23_RS09875 | 1987585..1987959 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| C2M23_RS09880 | 1987963..1988832 | + | 870 | WP_004189267.1 | copper homeostasis membrane protein CopD | - |
| C2M23_RS09885 | 1988849..1989187 | + | 339 | WP_016529031.1 | YebY family protein | - |
| - | 1989310..1989455 | - | 146 | - | - | Antitoxin |
| - | 1989346..1989448 | + | 103 | - | - | Toxin |
| C2M23_RS28915 | 1989823..1989966 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| C2M23_RS09895 | 1990071..1991039 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| C2M23_RS09900 | 1991196..1991849 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| C2M23_RS09905 | 1991846..1992037 | - | 192 | WP_002911395.1 | YebW family protein | - |
| C2M23_RS09910 | 1992135..1992374 | - | 240 | WP_002911393.1 | YebV family protein | - |
| C2M23_RS09915 | 1992490..1993923 | - | 1434 | WP_032411854.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T93513 NZ_CP026155:1989346-1989448 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT93513 NZ_CP026155:c1989455-1989310 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
