Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2013263..2013408 | Replicon | chromosome |
| Accession | NZ_CP026140 | ||
| Organism | Klebsiella pneumoniae strain F127 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2013299..2013401 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2013263..2013408 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2L73_RS10120 | 2008393..2010453 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| C2L73_RS10125 | 2010457..2011116 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| C2L73_RS10130 | 2011195..2011425 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| C2L73_RS10135 | 2011538..2011912 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| C2L73_RS10140 | 2011916..2012785 | + | 870 | WP_062955019.1 | copper homeostasis membrane protein CopD | - |
| C2L73_RS10145 | 2012802..2013140 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 2013263..2013408 | - | 146 | - | - | Antitoxin |
| - | 2013299..2013401 | + | 103 | - | - | Toxin |
| C2L73_RS29750 | 2013776..2013919 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| C2L73_RS10155 | 2014024..2014992 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| C2L73_RS10160 | 2015149..2015802 | + | 654 | WP_004180432.1 | protein-serine/threonine phosphatase | - |
| C2L73_RS10165 | 2015799..2015990 | - | 192 | WP_002911395.1 | YebW family protein | - |
| C2L73_RS10170 | 2016088..2016327 | - | 240 | WP_002911393.1 | YebV family protein | - |
| C2L73_RS10175 | 2016443..2017876 | - | 1434 | WP_004148845.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T93438 NZ_CP026140:2013299-2013401 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT93438 NZ_CP026140:c2013408-2013263 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
