Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) TsdAT/-
Location 2670407..2670921 Replicon chromosome
Accession NZ_CP026080
Organism Staphylococcus aureus strain FDAARGOS_12

Toxin (Protein)


Gene name TsdT Uniprot ID T1YA99
Locus tag RK70_RS13760 Protein ID WP_000581792.1
Coordinates 2670712..2670921 (+) Length 70 a.a.

Antitoxin (Protein)


Gene name TsdA Uniprot ID W8UW13
Locus tag RK70_RS13755 Protein ID WP_000138932.1
Coordinates 2670407..2670700 (+) Length 98 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
RK70_RS13720 2665670..2666311 + 642 WP_000483153.1 thiamine phosphate synthase -
RK70_RS13725 2666397..2667269 + 873 WP_000725802.1 membrane protein insertase YidC -
RK70_RS13745 2668082..2668729 - 648 WP_001187629.1 HD domain-containing protein -
RK70_RS13750 2668757..2670241 - 1485 WP_000571549.1 cardiolipin synthase -
RK70_RS13755 2670407..2670700 + 294 WP_000138932.1 copper-sensing transcriptional repressor CsoR Antitoxin
RK70_RS13760 2670712..2670921 + 210 WP_000581792.1 heavy-metal-associated domain-containing protein Toxin
RK70_RS13765 2671049..2671186 + 138 WP_000828354.1 hypothetical protein -
RK70_RS13770 2671450..2672652 - 1203 WP_001109939.1 rod shape-determining protein RodA -
RK70_RS13775 2672970..2674040 + 1071 WP_000159631.1 D-alanine--D-alanine ligase -
RK70_RS13780 2674055..2675413 + 1359 WP_000611465.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Heavy metal-associated domain, HMA

(23-66)

Antitoxin

Metal-sensitive transcriptional repressor

(14-92)


Sequences

Toxin        


Download         Length: 70 a.a.        Molecular weight: 7843.77 Da        Isoelectric Point: 4.1008

>T93242 WP_000581792.1 NZ_CP026080:2670712-2670921 [Staphylococcus aureus]
MIHQNTIYTAGIETEEQVSQLTERISNMIGVHQVNINIIDGQVTVSYETPANLNSIEKEIYDEGYKIVF

Download         Length: 210 bp

>T93242 NZ_CP026080:2670712-2670921 [Staphylococcus aureus]
ATGATACATCAAAATACGATTTACACAGCGGGAATTGAAACAGAAGAACAAGTAAGTCAATTGACAGAACGCATTTCAAA
TATGATAGGTGTTCATCAAGTGAATATTAATATAATAGATGGTCAAGTAACTGTATCGTATGAGACACCAGCAAATTTGA
ATAGTATTGAAAAAGAAATCTATGATGAAGGATACAAAATTGTATTTTAG

Antitoxin


Download         Length: 98 a.a.        Molecular weight: 11197.82 Da        Isoelectric Point: 6.2243

>AT93242 WP_000138932.1 NZ_CP026080:2670407-2670700 [Staphylococcus aureus]
MTEQDNAHHSEQIKTNLKSRLNRIEGQVRAINRMIEEDVYCDDVLTQIRATRSALNSVAIKLLEQHMKSCIMNKVNQGAQ
EEAMEELLVTFQKLIKD

Download         Length: 294 bp

>AT93242 NZ_CP026080:2670407-2670700 [Staphylococcus aureus]
ATGACTGAACAAGATAATGCACATCATTCTGAACAAATAAAAACGAATCTTAAATCACGTTTAAATCGAATTGAAGGACA
AGTGAGAGCGATTAATCGCATGATTGAAGAAGATGTCTATTGTGATGATGTCCTTACGCAAATAAGAGCGACACGTTCGG
CGTTAAACAGTGTTGCGATAAAGTTATTAGAACAACATATGAAAAGTTGTATTATGAATAAAGTTAATCAAGGTGCTCAG
GAAGAGGCAATGGAAGAGTTATTAGTGACTTTTCAAAAATTGATTAAAGACTAA

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
PDB 6FF1

Antitoxin

Source ID Structure
AlphaFold DB W8UW13

References