Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3329681..3329824 | Replicon | chromosome |
| Accession | NZ_CP026045 | ||
| Organism | Citrobacter freundii strain FDAARGOS_61 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3329716..3329819 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3329681..3329824 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| MC47_RS16125 | 3326128..3326790 | - | 663 | WP_043016687.1 | exodeoxyribonuclease X | - |
| MC47_RS16130 | 3326814..3327470 | - | 657 | WP_043016686.1 | carbon-nitrogen hydrolase family protein | - |
| MC47_RS16135 | 3327577..3327807 | - | 231 | WP_003034925.1 | DNA polymerase III subunit theta | - |
| MC47_RS16140 | 3327951..3328325 | + | 375 | WP_047410546.1 | CopC domain-containing protein YobA | - |
| MC47_RS16145 | 3328329..3329201 | + | 873 | WP_043016685.1 | copper homeostasis membrane protein CopD | - |
| MC47_RS16150 | 3329222..3329560 | + | 339 | WP_043016684.1 | YebY family protein | - |
| - | 3329681..3329824 | - | 144 | - | - | Antitoxin |
| - | 3329716..3329819 | + | 104 | - | - | Toxin |
| MC47_RS16155 | 3330129..3331385 | + | 1257 | WP_047410548.1 | hypothetical protein | - |
| MC47_RS16160 | 3331487..3332128 | + | 642 | WP_047410550.1 | protein-serine/threonine phosphatase | - |
| MC47_RS16165 | 3332129..3332320 | - | 192 | WP_016152779.1 | YebW family protein | - |
| MC47_RS16170 | 3332423..3332659 | - | 237 | WP_029139506.1 | DUF1480 family protein | - |
| MC47_RS16175 | 3332760..3334205 | - | 1446 | WP_123915346.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T92909 NZ_CP026045:3329716-3329819 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 144 bp
>AT92909 NZ_CP026045:c3329824-3329681 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT
