Detailed information of TA system    

insolicoBioinformatically predicted

Overview


TA module


Type VIII Classification (family/domain) SdsR-RyeA/-
Location 3329681..3329824 Replicon chromosome
Accession NZ_CP026045
Organism Citrobacter freundii strain FDAARGOS_61

Toxin (RNA)


Gene name SdsR
Locus tag -
Coordinates 3329716..3329819 (+)

Antitoxin (RNA)


Gene name RyeA
Locus tag -
Coordinates 3329681..3329824 (-)

Genomic Context


MC47_RS16140MC47_RS16145MC47_RS16150--MC47_RS16155MC47_RS16160MC47_RS16125MC47_RS16130MC47_RS16135--MC47_RS16165MC47_RS16170MC47_RS16175
Location: 3327951..3328325 (375 bp)
Type: Others
Protein ID: WP_047410546.1
Location: 3328329..3329201 (873 bp)
Type: Others
Protein ID: WP_043016685.1
Location: 3329222..3329560 (339 bp)
Type: Others
Protein ID: WP_043016684.1
Location: 3329716..3329819 (104 bp)
Type: Toxin
Protein ID: -
Location: 3330129..3331385 (1257 bp)
Type: Others
Protein ID: WP_047410548.1
Location: 3331487..3332128 (642 bp)
Type: Others
Protein ID: WP_047410550.1
Location: 3326128..3326790 (663 bp)
Type: Others
Protein ID: WP_043016687.1
Location: 3326814..3327470 (657 bp)
Type: Others
Protein ID: WP_043016686.1
Location: 3327577..3327807 (231 bp)
Type: Others
Protein ID: WP_003034925.1
Location: 3329681..3329824 (144 bp)
Type: Antitoxin
Protein ID: -
Location: 3332129..3332320 (192 bp)
Type: Others
Protein ID: WP_016152779.1
Location: 3332423..3332659 (237 bp)
Type: Others
Protein ID: WP_029139506.1
Location: 3332760..3334205 (1446 bp)
Type: Others
Protein ID: WP_123915346.1
ToxinAntitoxinOther genes
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Locus tag
Coordinates
Strand
Size (bp)
Protein ID
Product
Description
MC47_RS161253326128..3326790-663WP_043016687.1exodeoxyribonuclease X-
MC47_RS161303326814..3327470-657WP_043016686.1carbon-nitrogen hydrolase family protein-
MC47_RS161353327577..3327807-231WP_003034925.1DNA polymerase III subunit theta-
MC47_RS161403327951..3328325+375WP_047410546.1CopC domain-containing protein YobA-
MC47_RS161453328329..3329201+873WP_043016685.1copper homeostasis membrane protein CopD-
MC47_RS161503329222..3329560+339WP_043016684.1YebY family protein-
-3329681..3329824-144--Antitoxin
-3329716..3329819+104--Toxin
MC47_RS161553330129..3331385+1257WP_047410548.1hypothetical protein-
MC47_RS161603331487..3332128+642WP_047410550.1protein-serine/threonine phosphatase-
MC47_RS161653332129..3332320-192WP_016152779.1YebW family protein-
MC47_RS161703332423..3332659-237WP_029139506.1DUF1480 family protein-
MC47_RS161753332760..3334205-1446WP_123915346.116S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF-

Associated MGEs


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MGE
detail
Similar
MGEs
Relative
position
MGE Type
Cargo ARG
Virulence gene
Coordinates
Length (bp)
No matching records found


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Sequences


Toxin        


Download         Length: 104 bp

>T92909 NZ_CP026045:3329716-3329819 [Citrobacter freundii]
GGCAGGGTAACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT

Antitoxin


Download         Length: 144 bp

>AT92909 NZ_CP026045:c3329824-3329681 [Citrobacter freundii]
CACATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTT
GGCATTAATGCAGGCTAAGTTACCCTGCCATTTAAGAATAGATGACAGCGCCAGGTTTTCCAGT

Structures


Antitoxin

Download structure file

Antitoxin

Download structure file

References