Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1921091..1921362 | Replicon | chromosome |
| Accession | NZ_CP026028 | ||
| Organism | Escherichia coli strain CIT | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1921129..1921232 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1921091..1921362 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C2H83_RS10120 | 1918248..1919687 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C2H83_RS10125 | 1919805..1920041 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C2H83_RS10130 | 1920146..1920337 | + | 192 | WP_000457842.1 | YebW family protein | - |
| C2H83_RS10135 | 1920338..1920994 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1921091..1921362 | + | 272 | - | - | Antitoxin |
| - | 1921129..1921232 | - | 104 | - | - | Toxin |
| C2H83_RS10140 | 1921390..1921731 | - | 342 | WP_000976476.1 | YebY family protein | - |
| C2H83_RS10145 | 1921744..1922616 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| C2H83_RS10150 | 1922620..1922994 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C2H83_RS10155 | 1923133..1923363 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C2H83_RS10160 | 1923465..1924121 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C2H83_RS10165 | 1924145..1924807 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T92847 NZ_CP026028:c1921232-1921129 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT92847 NZ_CP026028:1921091-1921362 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
