Detailed information of TA system    

insolicoBioinformatically predicted

Overview

TA module


Type II Classification (family/domain) Hha-TomB/-
Location 3937685..3938304 Replicon chromosome
Accession NZ_CP026017
Organism Klebsiella pneumoniae strain 13190

Toxin (Protein)


Gene name Hha Uniprot ID R8WYV2
Locus tag C2D61_RS18975 Protein ID WP_002892050.1
Coordinates 3938086..3938304 (+) Length 73 a.a.

Antitoxin (Protein)


Gene name TomB Uniprot ID J2DPF6
Locus tag C2D61_RS18970 Protein ID WP_002892066.1
Coordinates 3937685..3938059 (+) Length 125 a.a.

Genomic Context

Locus tag Coordinates Strand Size (bp) Protein ID Product Description
C2D61_RS18960 3932837..3934030 + 1194 WP_004177236.1 multidrug efflux RND transporter periplasmic adaptor subunit AcrA -
C2D61_RS18965 3934053..3937199 + 3147 WP_002892069.1 multidrug efflux RND transporter permease subunit AcrB -
C2D61_RS18970 3937685..3938059 + 375 WP_002892066.1 Hha toxicity modulator TomB Antitoxin
C2D61_RS18975 3938086..3938304 + 219 WP_002892050.1 hemolysin expression modulator Hha Toxin
C2D61_RS18980 3938467..3939033 + 567 WP_002892030.1 maltose O-acetyltransferase -
C2D61_RS28005 3939005..3939145 - 141 WP_004147370.1 hypothetical protein -
C2D61_RS18985 3939166..3939636 + 471 WP_020802585.1 YlaC family protein -
C2D61_RS18990 3939611..3941062 - 1452 WP_004183206.1 PLP-dependent aminotransferase family protein -
C2D61_RS18995 3941163..3941861 + 699 WP_023287311.1 GNAT family N-acetyltransferase -
C2D61_RS19000 3941858..3941998 - 141 WP_002892018.1 type B 50S ribosomal protein L36 -
C2D61_RS19005 3941998..3942261 - 264 WP_032432663.1 type B 50S ribosomal protein L31 -

Associated MGEs

MGE
detail		 Similar
MGEs		 Relative
position		 MGE Type Cargo ARG Virulence gene Coordinates Length (bp)


Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.


Domains

Predicted by InterproScan

Toxin

Haemolysin expression modulating, HHA

(13-69)

Antitoxin

Biofilm formation regulator YbaJ

(1-116)


Sequences

Toxin        


Download         Length: 73 a.a.        Molecular weight: 8628.00 Da        Isoelectric Point: 8.9008

>T92710 WP_002892050.1 NZ_CP026017:3938086-3938304 [Klebsiella pneumoniae]
MSDKPLTKTDYLMRLRRCQTIDTLERVIEKNKYELSDNELAVFYSAADHRLAELTMNKLYDKIPTSVWKFIR

Download         Length: 219 bp

>T92710 NZ_CP026017:3938086-3938304 [Klebsiella pneumoniae]
ATGTCTGATAAGCCATTAACTAAAACAGACTATTTGATGCGCTTACGTCGTTGCCAGACAATTGACACGCTGGAGCGCGT
CATTGAAAAAAATAAATATGAACTGTCTGATAATGAGCTGGCGGTATTTTACTCAGCTGCCGACCATCGTCTGGCGGAAC
TGACCATGAATAAGCTATACGATAAAATCCCGACCTCTGTCTGGAAATTTATCCGCTAA

Antitoxin


Download         Length: 125 a.a.        Molecular weight: 14368.06 Da        Isoelectric Point: 4.8989

>AT92710 WP_002892066.1 NZ_CP026017:3937685-3938059 [Klebsiella pneumoniae]
MDEYSPKRHDIAQLRFLCETLYHDCLANLEESNHGWVNDPTSAVNLQLNELIEHIATFALNYKIKYAEDNKLIAQVDEYL
DDTFTLFSNYGINSTDLQKWKKSGNRLFRCFVNASRENPASLSC

Download         Length: 375 bp

>AT92710 NZ_CP026017:3937685-3938059 [Klebsiella pneumoniae]
ATGGACGAATACTCGCCAAAAAGACATGATATTGCACAGCTACGCTTTCTCTGCGAAACGCTGTATCATGACTGCCTTGC
AAACCTGGAAGAGAGCAACCATGGCTGGGTCAACGACCCGACGTCGGCTGTCAATCTCCAGTTAAATGAATTGATCGAGC
ACATTGCCACATTCGCTCTTAATTATAAAATTAAGTATGCAGAGGATAATAAGCTGATCGCTCAGGTTGACGAATATCTG
GACGACACTTTTACGTTGTTCAGTAACTACGGCATTAACTCTACGGATTTGCAAAAGTGGAAAAAATCCGGTAACCGACT
ATTTCGTTGCTTTGTCAACGCCAGCCGGGAAAACCCGGCCAGTCTATCGTGTTAG

Similar Proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
Protein Organism Identities (%) Coverage (%) Ha-value

Structures

Toxin

Source ID Structure
AlphaFold DB A0A2P8K6F2

Antitoxin

Source ID Structure
AlphaFold DB A0A0H3GJ93

References