Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1179336..1179568 | Replicon | chromosome |
| Accession | NZ_CP025979 | ||
| Organism | Escherichia marmotae strain HT073016 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1179337..1179440 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1179336..1179568 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1192_RS06255 | 1175469..1175807 | + | 339 | WP_000149055.1 | DUF1971 domain-containing protein | - |
| C1192_RS06265 | 1176397..1177134 | - | 738 | WP_052463016.1 | hypothetical protein | - |
| C1192_RS06275 | 1178405..1179205 | + | 801 | WP_077784531.1 | tyrosine-type recombinase/integrase | - |
| - | 1179336..1179568 | + | 233 | - | - | Antitoxin |
| - | 1179337..1179440 | - | 104 | - | - | Toxin |
| C1192_RS06280 | 1179598..1179939 | - | 342 | WP_000976465.1 | YebY family protein | - |
| C1192_RS06285 | 1179952..1180824 | - | 873 | WP_038354771.1 | copper homeostasis membrane protein CopD | - |
| C1192_RS06290 | 1180828..1181202 | - | 375 | WP_000168753.1 | CopC domain-containing protein YobA | - |
| C1192_RS06295 | 1181341..1181571 | + | 231 | WP_000916764.1 | DNA polymerase III subunit theta | - |
| C1192_RS06300 | 1181672..1182328 | + | 657 | WP_000122137.1 | carbon-nitrogen hydrolase family protein | - |
| C1192_RS06305 | 1182353..1183015 | + | 663 | WP_000944296.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1172023..1183015 | 10992 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T92612 NZ_CP025979:c1179440-1179337 [Escherichia marmotae]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTTTTTTT
Antitoxin
Download Length: 233 bp
>AT92612 NZ_CP025979:1179336-1179568 [Escherichia marmotae]
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCGTAAAGTGGTCAGA
AAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCGTTCTGGTGAAAGCACCCGAGCGGTTTTTT
TAAAAAAAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCA
TTAATGCAGGCTTAGTTGCCTTGCCTTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTCCGCGCGTAAAGTGGTCAGA
AAAAAAGCGCGTTTATCATCCTCTAAAATGTTAAAAACCGCCCGTTCTGGTGAAAGCACCCGAGCGGTTTTTT
