Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2124633..2124904 | Replicon | chromosome |
| Accession | NZ_CP025950 | ||
| Organism | Escherichia coli strain SCEC020023 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2124763..2124866 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2124633..2124904 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1A20_RS11750 | 2121188..2121850 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| C1A20_RS11755 | 2121874..2122530 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C1A20_RS11760 | 2122632..2122862 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C1A20_RS11765 | 2123001..2123375 | + | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| C1A20_RS11770 | 2123379..2124251 | + | 873 | WP_042346164.1 | copper homeostasis membrane protein CopD | - |
| C1A20_RS11775 | 2124264..2124605 | + | 342 | WP_000976476.1 | YebY family protein | - |
| - | 2124633..2124904 | - | 272 | - | - | Antitoxin |
| - | 2124763..2124866 | + | 104 | - | - | Toxin |
| C1A20_RS11780 | 2125001..2125657 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| C1A20_RS11785 | 2125658..2125849 | - | 192 | WP_000457842.1 | YebW family protein | - |
| C1A20_RS11790 | 2125954..2126190 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C1A20_RS11795 | 2126308..2127747 | - | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T92542 NZ_CP025950:2124763-2124866 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT92542 NZ_CP025950:c2124904-2124633 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
