Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4439038..4439309 | Replicon | chromosome |
| Accession | NZ_CP025916 | ||
| Organism | Escherichia coli strain 120899 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4439168..4439271 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4439038..4439309 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXW56_RS21990 | 4435593..4436255 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CXW56_RS21995 | 4436279..4436935 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CXW56_RS22000 | 4437037..4437267 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CXW56_RS22005 | 4437406..4437780 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CXW56_RS22010 | 4437784..4438656 | + | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| CXW56_RS22015 | 4438669..4439010 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 4439038..4439309 | - | 272 | - | - | Antitoxin |
| - | 4439168..4439271 | + | 104 | - | - | Toxin |
| CXW56_RS22020 | 4439406..4440062 | + | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| CXW56_RS22025 | 4440063..4440254 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CXW56_RS22030 | 4440359..4440595 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CXW56_RS22035 | 4440713..4442152 | - | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T92444 NZ_CP025916:4439168-4439271 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT92444 NZ_CP025916:c4439309-4439038 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
