Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1534466..1534737 | Replicon | chromosome |
| Accession | NZ_CP025881 | ||
| Organism | Escherichia coli strain 503440 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1534504..1534607 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1534466..1534737 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXX05_RS07615 | 1531623..1533062 | + | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CXX05_RS07620 | 1533180..1533416 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CXX05_RS07625 | 1533521..1533712 | + | 192 | WP_000457842.1 | YebW family protein | - |
| CXX05_RS07630 | 1533713..1534369 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 1534466..1534737 | + | 272 | - | - | Antitoxin |
| - | 1534504..1534607 | - | 104 | - | - | Toxin |
| CXX05_RS07635 | 1534765..1535106 | - | 342 | WP_000976492.1 | YebY family protein | - |
| CXX05_RS07640 | 1535119..1535991 | - | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| CXX05_RS07645 | 1535995..1536369 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CXX05_RS07650 | 1536508..1536738 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CXX05_RS07655 | 1536840..1537496 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CXX05_RS07660 | 1537520..1538182 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | - | 1526236..1571923 | 45687 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T92297 NZ_CP025881:c1534607-1534504 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT92297 NZ_CP025881:1534466-1534737 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
