Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2848787..2849058 | Replicon | chromosome |
| Accession | NZ_CP025869 | ||
| Organism | Escherichia coli strain 503829 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2848917..2849020 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2848787..2849058 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXX08_RS14085 | 2845342..2846004 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CXX08_RS14090 | 2846028..2846684 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CXX08_RS14095 | 2846786..2847016 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CXX08_RS14100 | 2847155..2847529 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CXX08_RS14105 | 2847533..2848405 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| CXX08_RS14110 | 2848418..2848759 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 2848787..2849058 | - | 272 | - | - | Antitoxin |
| - | 2848917..2849020 | + | 104 | - | - | Toxin |
| CXX08_RS14115 | 2849155..2849811 | + | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| CXX08_RS14120 | 2849812..2850003 | - | 192 | WP_000457842.1 | YebW family protein | - |
| CXX08_RS14125 | 2850108..2850344 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CXX08_RS14130 | 2850462..2851901 | - | 1440 | WP_000057022.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T92280 NZ_CP025869:2848917-2849020 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT92280 NZ_CP025869:c2849058-2848787 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
