Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 701982..702253 | Replicon | chromosome |
| Accession | NZ_CP025859 | ||
| Organism | Escherichia coli strain 504239 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 702020..702123 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 701982..702253 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXV92_RS03575 | 699139..700578 | + | 1440 | WP_001383086.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CXV92_RS03580 | 700696..700932 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CXV92_RS03585 | 701037..701228 | + | 192 | WP_001313035.1 | YebW family protein | - |
| CXV92_RS03590 | 701229..701885 | - | 657 | WP_000812739.1 | protein-serine/threonine phosphatase | - |
| - | 701982..702253 | + | 272 | - | - | Antitoxin |
| - | 702020..702123 | - | 104 | - | - | Toxin |
| CXV92_RS03595 | 702281..702622 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CXV92_RS03600 | 702635..703507 | - | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| CXV92_RS03605 | 703511..703885 | - | 375 | WP_000168736.1 | CopC domain-containing protein YobA | - |
| CXV92_RS03610 | 704024..704254 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CXV92_RS03615 | 704356..705012 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CXV92_RS03620 | 705036..705698 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T92180 NZ_CP025859:c702123-702020 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT92180 NZ_CP025859:701982-702253 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
