Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3481930..3482201 | Replicon | chromosome |
| Accession | NZ_CP025849 | ||
| Organism | Escherichia coli strain 600468 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3482060..3482163 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3481930..3482201 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXX14_RS16715 | 3478485..3479147 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CXX14_RS16720 | 3479171..3479827 | - | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CXX14_RS16725 | 3479929..3480159 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CXX14_RS16730 | 3480298..3480672 | + | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CXX14_RS16735 | 3480676..3481548 | + | 873 | WP_000879280.1 | copper homeostasis membrane protein CopD | - |
| CXX14_RS16740 | 3481561..3481902 | + | 342 | WP_000976492.1 | YebY family protein | - |
| - | 3481930..3482201 | - | 272 | - | - | Antitoxin |
| - | 3482060..3482163 | + | 104 | - | - | Toxin |
| CXX14_RS16745 | 3482298..3482954 | + | 657 | WP_000812720.1 | protein-serine/threonine phosphatase | - |
| CXX14_RS16750 | 3482955..3483146 | - | 192 | WP_001296140.1 | YebW family protein | - |
| CXX14_RS16755 | 3483251..3483487 | - | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CXX14_RS16760 | 3483605..3485044 | - | 1440 | WP_001512833.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T92102 NZ_CP025849:3482060-3482163 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT92102 NZ_CP025849:c3482201-3481930 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGTAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
