Detailed information of TA system
Overview
TA module
| Type | IV | Classification (family/domain) | yeeUV (cbtA-cbeA)/CbtA-CbeA |
| Location | 4870803..4871635 | Replicon | chromosome |
| Accession | NZ_CP025847 | ||
| Organism | Escherichia coli strain 602354 | ||
Toxin (Protein)
| Gene name | yeeV | Uniprot ID | - |
| Locus tag | CXX15_RS23940 | Protein ID | WP_000854762.1 |
| Coordinates | 4871261..4871635 (+) | Length | 125 a.a. |
Antitoxin (Protein)
| Gene name | yeeU | Uniprot ID | S1NM52 |
| Locus tag | CXX15_RS23935 | Protein ID | WP_001295723.1 |
| Coordinates | 4870803..4871171 (+) | Length | 123 a.a. |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXX15_RS23900 | 4866842..4867315 | + | 474 | WP_000855059.1 | antirestriction protein | - |
| CXX15_RS23905 | 4867331..4867807 | + | 477 | WP_001186774.1 | RadC family protein | - |
| CXX15_RS23910 | 4867870..4868091 | + | 222 | WP_000692341.1 | DUF987 domain-containing protein | - |
| CXX15_RS23920 | 4868280..4869893 | - | 1614 | WP_001744949.1 | IS66-like element ISEc47 family transposase | - |
| CXX15_RS23925 | 4869924..4870274 | - | 351 | WP_000624688.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| CXX15_RS23930 | 4870271..4870705 | - | 435 | WP_001403014.1 | IS66 family insertion sequence hypothetical protein | - |
| CXX15_RS23935 | 4870803..4871171 | + | 369 | WP_001295723.1 | type IV toxin-antitoxin system YeeU family antitoxin | Antitoxin |
| CXX15_RS23940 | 4871261..4871635 | + | 375 | WP_000854762.1 | TA system toxin CbtA family protein | Toxin |
| CXX15_RS23945 | 4871632..4871838 | + | 207 | WP_000976829.1 | hypothetical protein | - |
| CXX15_RS23950 | 4871851..4871964 | + | 114 | WP_001161660.1 | DUF957 domain-containing protein | - |
| CXX15_RS23955 | 4872071..4873132 | - | 1062 | Protein_4594 | IS66-like element ISEc8 family transposase | - |
| CXX15_RS23960 | 4873182..4873529 | - | 348 | WP_000612591.1 | IS66 family insertion sequence element accessory protein TnpB | - |
| CXX15_RS23965 | 4873526..4873906 | - | 381 | WP_001171554.1 | IS66 family insertion sequence hypothetical protein | - |
| CXX15_RS23970 | 4874009..4874983 | + | 975 | WP_001433436.1 | IS21 family transposase | - |
| CXX15_RS23975 | 4874977..4875759 | + | 783 | WP_001667685.1 | IS21-like element IS100kyp family helper ATPase IstB | - |
| CXX15_RS23985 | 4876033..4876215 | + | 183 | WP_001667686.1 | ethanolamine utilization - propanediol utilization family protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | IScluster/Tn | - | - | 4868280..4886721 | 18441 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 125 a.a. Molecular weight: 14094.15 Da Isoelectric Point: 7.1881
>T92084 WP_000854762.1 NZ_CP025847:4871261-4871635 [Escherichia coli]
MKTLPDTHVREVSCCPSPVTIWQTLLTRLLDQHYSLTLNDTPFVDERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK
MKTLPDTHVREVSCCPSPVTIWQTLLTRLLDQHYSLTLNDTPFVDERVIEQHIEAGISLCDAVNFLVEKYALVRTDQPGF
SACTRSQLINSIDILRARRATGLMTRDNYRTVNNITLGKYPEAK
Download Length: 375 bp
>T92084 NZ_CP025847:4871261-4871635 [Escherichia coli]
ATGAAAACATTACCCGACACGCATGTACGGGAGGTATCGTGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAC
CCGGTTACTGGACCAGCATTACAGCCTTACGCTGAATGACACACCGTTCGTGGATGAACGCGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATTCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGA
ATGAAAACATTACCCGACACGCATGTACGGGAGGTATCGTGCTGCCCGTCTCCCGTCACCATCTGGCAGACACTGCTCAC
CCGGTTACTGGACCAGCATTACAGCCTTACGCTGAATGACACACCGTTCGTGGATGAACGCGTGATTGAGCAGCATATTG
AGGCAGGCATTTCACTGTGTGATGCGGTGAACTTTCTCGTGGAAAAATACGCGCTGGTGCGTACCGACCAGCCGGGATTC
AGCGCCTGTACCCGCTCTCAGTTAATAAACAGCATCGATATTCTCCGGGCTCGCAGGGCGACCGGCCTGATGACCCGCGA
CAATTACAGAACGGTAAATAACATTACCCTGGGTAAGTATCCGGAGGCGAAATGA
Antitoxin
Download Length: 123 a.a. Molecular weight: 13592.40 Da Isoelectric Point: 6.6255
>AT92084 WP_001295723.1 NZ_CP025847:4870803-4871171 [Escherichia coli]
VSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFRDADAYPLDQAFPLLMKQLKLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
VSDTLSGTTHPDDNDDHPWWGLPCTVTPCFGARLVQEGNRLHYLADRAGIRGRFRDADAYPLDQAFPLLMKQLKLMLTSG
ELNPRHQHTVTLYAKGLTCEADTLGSCGYVYLAVYPTPETKK
Download Length: 369 bp
>AT92084 NZ_CP025847:4870803-4871171 [Escherichia coli]
GTGTCAGACACACTTTCCGGGACAACGCATCCCGATGACAATGACGACCATCCCTGGTGGGGACTACCCTGCACAGTGAC
GCCCTGTTTCGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGTGCCGGTATCAGAGGCCGGT
TCAGAGATGCGGATGCGTACCCTCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGAAATTAATGCTCACCAGTGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCGAAGGGGCTGACCTGTGAAGCCGACACCCTCGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACACCTGAAACGAAAAAGTAA
GTGTCAGACACACTTTCCGGGACAACGCATCCCGATGACAATGACGACCATCCCTGGTGGGGACTACCCTGCACAGTGAC
GCCCTGTTTCGGCGCCCGTCTGGTGCAGGAGGGTAACCGGTTGCATTACCTTGCCGACCGTGCCGGTATCAGAGGCCGGT
TCAGAGATGCGGATGCGTACCCTCTGGACCAGGCCTTTCCGCTGCTGATGAAACAACTGAAATTAATGCTCACCAGTGGT
GAACTGAATCCCCGCCATCAGCATACCGTGACACTGTATGCGAAGGGGCTGACCTGTGAAGCCGACACCCTCGGCTCCTG
TGGTTACGTTTATCTGGCTGTTTATCCGACACCTGAAACGAAAAAGTAA
Similar Proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|