Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 4705521..4705792 | Replicon | chromosome |
| Accession | NZ_CP025847 | ||
| Organism | Escherichia coli strain 602354 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 4705559..4705662 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 4705521..4705792 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXX15_RS22950 | 4702678..4704117 | + | 1440 | WP_001307251.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| CXX15_RS22955 | 4704235..4704471 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| CXX15_RS22960 | 4704576..4704767 | + | 192 | WP_001296140.1 | YebW family protein | - |
| CXX15_RS22965 | 4704768..4705424 | - | 657 | WP_000812735.1 | protein-serine/threonine phosphatase | - |
| - | 4705521..4705792 | + | 272 | - | - | Antitoxin |
| - | 4705559..4705662 | - | 104 | - | - | Toxin |
| CXX15_RS22970 | 4705820..4706161 | - | 342 | WP_000976472.1 | YebY family protein | - |
| CXX15_RS22975 | 4706174..4707046 | - | 873 | WP_000879282.1 | copper homeostasis membrane protein CopD | - |
| CXX15_RS22980 | 4707050..4707424 | - | 375 | WP_000204699.1 | CopC domain-containing protein YobA | - |
| CXX15_RS22985 | 4707563..4707793 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CXX15_RS22990 | 4707895..4708551 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| CXX15_RS22995 | 4708575..4709237 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T92076 NZ_CP025847:c4705662-4705559 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT92076 NZ_CP025847:4705521-4705792 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
