Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3965264..3965535 | Replicon | chromosome |
| Accession | NZ_CP025840 | ||
| Organism | Escherichia coli strain 214-4 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3965394..3965497 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3965264..3965535 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXX41_RS19545 | 3961819..3962481 | - | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
| CXX41_RS19550 | 3962505..3963161 | - | 657 | WP_000011660.1 | carbon-nitrogen hydrolase family protein | - |
| CXX41_RS19555 | 3963263..3963493 | - | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| CXX41_RS19560 | 3963632..3964006 | + | 375 | WP_000255065.1 | CopC domain-containing protein YobA | - |
| CXX41_RS19565 | 3964010..3964882 | + | 873 | WP_000879298.1 | copper homeostasis membrane protein CopD | - |
| CXX41_RS19570 | 3964895..3965236 | + | 342 | WP_000976472.1 | YebY family protein | - |
| - | 3965264..3965535 | - | 272 | - | - | Antitoxin |
| - | 3965394..3965497 | + | 104 | - | - | Toxin |
| CXX41_RS19575 | 3965632..3966288 | + | 657 | WP_000812733.1 | protein-serine/threonine phosphatase | - |
| CXX41_RS19580 | 3966289..3966480 | - | 192 | WP_001338167.1 | YebW family protein | - |
| CXX41_RS19585 | 3966585..3966821 | - | 237 | WP_001338166.1 | DUF1480 family protein | - |
| CXX41_RS19590 | 3966939..3968378 | - | 1440 | WP_001338165.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T92016 NZ_CP025840:3965394-3965497 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT92016 NZ_CP025840:c3965535-3965264 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
