Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 3003228..3003374 | Replicon | chromosome |
| Accession | NZ_CP025800 | ||
| Organism | Yersinia ruckeri strain SC09 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 3003277..3003370 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 3003228..3003374 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| NJ56_RS14025 | 2998784..2999734 | + | 951 | WP_004721733.1 | prolyl aminopeptidase | - |
| NJ56_RS14030 | 2999857..3000087 | - | 231 | WP_038276017.1 | DNA polymerase III subunit theta | - |
| NJ56_RS14035 | 3000490..3001005 | + | 516 | WP_004721727.1 | non-heme ferritin | - |
| NJ56_RS14040 | 3001410..3001796 | + | 387 | WP_038243346.1 | CopC domain-containing protein YobA | - |
| NJ56_RS14045 | 3001798..3002682 | + | 885 | WP_004721723.1 | copper homeostasis membrane protein CopD | - |
| NJ56_RS14050 | 3002777..3003118 | + | 342 | WP_004721721.1 | YebY family protein | - |
| - | 3003228..3003374 | - | 147 | - | - | Antitoxin |
| - | 3003277..3003370 | + | 94 | - | - | Toxin |
| NJ56_RS14055 | 3003446..3004051 | - | 606 | WP_038276015.1 | tyrosine-type recombinase/integrase | - |
| NJ56_RS14060 | 3004170..3005315 | - | 1146 | WP_004721718.1 | YRC family class C beta-lactamase | - |
| NJ56_RS14065 | 3006056..3006742 | - | 687 | WP_038242734.1 | hypothetical protein | - |
| NJ56_RS14070 | 3006949..3007578 | - | 630 | WP_004721714.1 | hypothetical protein | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 94 bp
>T91988 NZ_CP025800:3003277-3003370 [Yersinia ruckeri]
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
TAAGCCTGCATGAAATGCCAACTTTTAGCGCACGGCTCTATCCCAAGAGCCATTTCCCTGGACCGAATATAGGATTCGTA
TTCGGTCTTTTTTT
Antitoxin
Download Length: 147 bp
>AT91988 NZ_CP025800:c3003374-3003228 [Yersinia ruckeri]
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
AGTTAAAAAAAGACCGAATACGAATCCTATATTCGGTCCAGGGAAATGGCTCTTGGGATAGAGCCGTGCGCTAAAAGTTG
GCATTTCATGCAGGCTTATTAAGCCGTACCACTTAAGCGTAGTAGACGACCCACATTTTACCAATTT
