Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2812291..2812562 | Replicon | chromosome |
| Accession | NZ_CP025747 | ||
| Organism | Escherichia coli strain ML35 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2812329..2812432 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2812291..2812562 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C1I23_RS15140 | 2809448..2810887 | + | 1440 | WP_001352260.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| C1I23_RS15145 | 2811005..2811241 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| C1I23_RS15150 | 2811346..2811537 | + | 192 | WP_000457842.1 | YebW family protein | - |
| C1I23_RS15155 | 2811538..2812194 | - | 657 | WP_000812724.1 | protein-serine/threonine phosphatase | - |
| - | 2812291..2812562 | + | 272 | - | - | Antitoxin |
| - | 2812329..2812432 | - | 104 | - | - | Toxin |
| C1I23_RS15160 | 2812590..2812931 | - | 342 | WP_000976476.1 | YebY family protein | - |
| C1I23_RS15165 | 2812944..2813816 | - | 873 | WP_000879289.1 | copper homeostasis membrane protein CopD | - |
| C1I23_RS15170 | 2813820..2814194 | - | 375 | WP_102597174.1 | CopC domain-containing protein YobA | - |
| C1I23_RS15175 | 2814333..2814563 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| C1I23_RS15180 | 2814665..2815321 | + | 657 | WP_000011658.1 | carbon-nitrogen hydrolase family protein | - |
| C1I23_RS15185 | 2815345..2816007 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T91881 NZ_CP025747:c2812432-2812329 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT91881 NZ_CP025747:2812291-2812562 [Escherichia coli]
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGAAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTGAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
