Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1818121..1818389 | Replicon | chromosome |
| Accession | NZ_CP025716 | ||
| Organism | Escherichia coli strain BH100L substr. MG2017 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1818159..1818261 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1818121..1818389 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| BH100L_RS09350 | 1815278..1816717 | + | 1440 | WP_001298454.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| BH100L_RS09355 | 1816835..1817071 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| BH100L_RS09360 | 1817176..1817367 | + | 192 | WP_001296140.1 | YebW family protein | - |
| BH100L_RS09365 | 1817368..1818024 | - | 657 | WP_000812743.1 | protein-serine/threonine phosphatase | - |
| - | 1818121..1818389 | + | 269 | - | - | Antitoxin |
| - | 1818159..1818261 | - | 103 | - | - | Toxin |
| BH100L_RS09370 | 1818419..1818760 | - | 342 | WP_000984819.1 | YebY family protein | - |
| BH100L_RS09375 | 1818773..1819645 | - | 873 | WP_000879311.1 | copper homeostasis membrane protein CopD | - |
| BH100L_RS09380 | 1819649..1820023 | - | 375 | WP_000168747.1 | CopC domain-containing protein YobA | - |
| BH100L_RS09385 | 1820162..1820392 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| BH100L_RS09390 | 1820495..1821151 | + | 657 | WP_000011644.1 | carbon-nitrogen hydrolase family protein | - |
| BH100L_RS09395 | 1821175..1821837 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T91835 NZ_CP025716:c1818261-1818159 [Escherichia coli]
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
GCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 269 bp
>AT91835 NZ_CP025716:1818121-1818389 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCTCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGTGGTGGTCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTT
