Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 336507..336778 | Replicon | chromosome |
| Accession | NZ_CP025707 | ||
| Organism | Escherichia coli strain YDC107 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 336545..336648 (-) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 336507..336778 (+) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| YDC107_RS01780 | 333664..335103 | + | 1440 | WP_024166480.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
| YDC107_RS01785 | 335221..335457 | + | 237 | WP_001295499.1 | DUF1480 family protein | - |
| YDC107_RS01790 | 335562..335753 | + | 192 | WP_001296140.1 | YebW family protein | - |
| YDC107_RS01795 | 335754..336410 | - | 657 | WP_001520704.1 | protein-serine/threonine phosphatase | - |
| - | 336507..336778 | + | 272 | - | - | Antitoxin |
| - | 336545..336648 | - | 104 | - | - | Toxin |
| YDC107_RS01800 | 336806..337147 | - | 342 | WP_001520705.1 | YebY family protein | - |
| YDC107_RS01805 | 337160..338032 | - | 873 | WP_000879330.1 | copper homeostasis membrane protein CopD | - |
| YDC107_RS01810 | 338036..338410 | - | 375 | WP_000204705.1 | CopC domain-containing protein YobA | - |
| YDC107_RS01815 | 338549..338779 | + | 231 | WP_000916763.1 | DNA polymerase III subunit theta | - |
| YDC107_RS01820 | 338881..339537 | + | 657 | WP_000011653.1 | carbon-nitrogen hydrolase family protein | - |
| YDC107_RS01825 | 339561..340223 | + | 663 | WP_000944256.1 | exodeoxyribonuclease X | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T91776 NZ_CP025707:c336648-336545 [Escherichia coli]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATAC
AGGAATCGTGTTCGGTCTCTTTTT
Antitoxin
Download Length: 272 bp
>AT91776 NZ_CP025707:336507-336778 [Escherichia coli]
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
AAAGTCAGCGAAGGGAATGCTTCTGGCTTTTAACAGATAAAAAGAGACCGAACACGATTCCTGTATTCGGTCCAGGGAAA
TGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGCATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACG
ACGCCAGGTTTTCCAGTTTGCGTGCAAAATGGTCAATAAAAAGCGCGGTGGCCATCAGCTTAAATGTTAAAAACCGCCCG
TTCTGGTGAAAGAACTGAGGCGGTTTTTTTAT
