Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 1876129..1876274 | Replicon | chromosome |
| Accession | NZ_CP025684 | ||
| Organism | Klebsiella pneumoniae strain L5-2 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 1876165..1876267 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 1876129..1876274 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C0067_RS09935 | 1871259..1873319 | + | 2061 | WP_004151449.1 | oligopeptidase B | - |
| C0067_RS09940 | 1873323..1873982 | - | 660 | WP_002911407.1 | exodeoxyribonuclease X | - |
| C0067_RS09945 | 1874061..1874291 | - | 231 | WP_002911406.1 | DNA polymerase III subunit theta | - |
| C0067_RS09950 | 1874404..1874778 | + | 375 | WP_004151448.1 | CopC domain-containing protein YobA | - |
| C0067_RS09955 | 1874782..1875651 | + | 870 | WP_115658448.1 | copper homeostasis membrane protein CopD | - |
| C0067_RS09960 | 1875668..1876006 | + | 339 | WP_002911404.1 | YebY family protein | - |
| - | 1876129..1876274 | - | 146 | - | - | Antitoxin |
| - | 1876165..1876267 | + | 103 | - | - | Toxin |
| C0067_RS26800 | 1876642..1876785 | - | 144 | WP_002911398.1 | Ecr family regulatory small membrane protein | - |
| C0067_RS09970 | 1876890..1877858 | - | 969 | WP_004151446.1 | VirK/YbjX family protein | - |
| C0067_RS09975 | 1878015..1878668 | + | 654 | WP_019725444.1 | protein-serine/threonine phosphatase | - |
| C0067_RS09980 | 1878665..1878856 | - | 192 | WP_002911395.1 | YebW family protein | - |
| C0067_RS09985 | 1878954..1879193 | - | 240 | WP_002911393.1 | YebV family protein | - |
| C0067_RS09990 | 1879309..1880742 | - | 1434 | WP_128206428.1 | 16S rRNA (cytosine(1407)-C(5))-methyltransferase RsmF | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 103 bp
>T91719 NZ_CP025684:1876165-1876267 [Klebsiella pneumoniae]
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
GCAAGGCGACTTAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAATACA
GGAATCGTATTCGGTCTCTTTTT
Antitoxin
Download Length: 146 bp
>AT91719 NZ_CP025684:c1876274-1876129 [Klebsiella pneumoniae]
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
TAAAGATAAAAAGAGACCGAATACGATTCCTGTATTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAG
TTGGCATTAATGCAGGCTAAGTCGCCTTGCACTATAAGAATAGTTTAACGCGTCAGCTTTTCCAGT
