Detailed information of TA system
Bioinformatically predictedOverview
TA module
Type | II | Classification (family/domain) | vapBC/VapC-StbC |
Location | 174483..175156 | Replicon | chromosome |
Accession | NZ_CP025682 | ||
Organism | Azoarcus pumilus strain SY39 |
Toxin (Protein)
Gene name | vapC | Uniprot ID | - |
Locus tag | C0099_RS00895 | Protein ID | WP_102245690.1 |
Coordinates | 174483..174905 (-) | Length | 141 a.a. |
Antitoxin (Protein)
Gene name | vapB | Uniprot ID | - |
Locus tag | C0099_RS00900 | Protein ID | WP_102245691.1 |
Coordinates | 174902..175156 (-) | Length | 85 a.a. |
Genomic Context
Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
---|---|---|---|---|---|---|
C0099_RS00850 | 169854..170066 | - | 213 | WP_102245682.1 | hypothetical protein | - |
C0099_RS00855 | 170138..171385 | - | 1248 | WP_102245683.1 | uracil-xanthine permease family protein | - |
C0099_RS00860 | 171554..172186 | - | 633 | WP_102248328.1 | uracil phosphoribosyltransferase | - |
C0099_RS00865 | 172409..172660 | + | 252 | WP_102245684.1 | type II toxin-antitoxin system prevent-host-death family antitoxin | - |
C0099_RS00870 | 172657..172911 | + | 255 | WP_102245685.1 | Txe/YoeB family addiction module toxin | - |
C0099_RS00875 | 173145..173528 | - | 384 | WP_199797637.1 | HigA family addiction module antidote protein | - |
C0099_RS00880 | 173438..173716 | - | 279 | WP_102245687.1 | type II toxin-antitoxin system RelE/ParE family toxin | - |
C0099_RS00885 | 173769..174164 | - | 396 | WP_102245688.1 | type II toxin-antitoxin system VapC family toxin | - |
C0099_RS00890 | 174161..174406 | - | 246 | WP_102245689.1 | Arc family DNA-binding protein | - |
C0099_RS00895 | 174483..174905 | - | 423 | WP_102245690.1 | type II toxin-antitoxin system VapC family toxin | Toxin |
C0099_RS00900 | 174902..175156 | - | 255 | WP_102245691.1 | plasmid stabilization protein | Antitoxin |
C0099_RS00905 | 175459..177048 | - | 1590 | WP_102245692.1 | SEC-C domain-containing protein | - |
Associated MGEs
MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
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Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 141 a.a. Molecular weight: 14843.10 Da Isoelectric Point: 5.1283
>T91702 WP_102245690.1 NZ_CP025682:c174905-174483 [Azoarcus pumilus]
MIVLDTNVVSEAMKAAPNATVLAWLDEQAAETLYLSSVTLAELLFGIGAPPSGRRKDALKQTLDGLLVLFADRVLPFDTD
AARHYAELAVSARAAGKGFPTPDGYIAAIAKARGFTVATRDVAPFQAAGLKVINPWEAMQ
MIVLDTNVVSEAMKAAPNATVLAWLDEQAAETLYLSSVTLAELLFGIGAPPSGRRKDALKQTLDGLLVLFADRVLPFDTD
AARHYAELAVSARAAGKGFPTPDGYIAAIAKARGFTVATRDVAPFQAAGLKVINPWEAMQ
Download Length: 423 bp
>T91702 NZ_CP025682:c174905-174483 [Azoarcus pumilus]
ATGATCGTCCTGGATACCAATGTCGTTTCCGAGGCGATGAAAGCCGCGCCGAACGCCACCGTGCTGGCGTGGTTGGATGA
GCAGGCGGCCGAAACCCTTTACCTTTCCAGCGTCACGCTTGCCGAACTGCTGTTCGGCATCGGTGCCCCGCCATCCGGCC
GGCGCAAGGATGCGCTGAAGCAAACGCTGGATGGCCTTCTGGTGCTGTTCGCGGATCGCGTGCTCCCCTTTGACACCGAC
GCAGCCCGGCACTACGCCGAGCTGGCCGTTTCCGCCCGAGCGGCCGGCAAGGGCTTCCCCACACCCGACGGCTATATCGC
CGCCATCGCGAAGGCTCGCGGTTTCACCGTCGCCACGCGCGACGTTGCGCCATTCCAGGCGGCGGGCCTCAAGGTCATCA
ATCCGTGGGAGGCCATGCAGTGA
ATGATCGTCCTGGATACCAATGTCGTTTCCGAGGCGATGAAAGCCGCGCCGAACGCCACCGTGCTGGCGTGGTTGGATGA
GCAGGCGGCCGAAACCCTTTACCTTTCCAGCGTCACGCTTGCCGAACTGCTGTTCGGCATCGGTGCCCCGCCATCCGGCC
GGCGCAAGGATGCGCTGAAGCAAACGCTGGATGGCCTTCTGGTGCTGTTCGCGGATCGCGTGCTCCCCTTTGACACCGAC
GCAGCCCGGCACTACGCCGAGCTGGCCGTTTCCGCCCGAGCGGCCGGCAAGGGCTTCCCCACACCCGACGGCTATATCGC
CGCCATCGCGAAGGCTCGCGGTTTCACCGTCGCCACGCGCGACGTTGCGCCATTCCAGGCGGCGGGCCTCAAGGTCATCA
ATCCGTGGGAGGCCATGCAGTGA
Antitoxin
Download Length: 85 a.a. Molecular weight: 9343.59 Da Isoelectric Point: 6.4743
>AT91702 WP_102245691.1 NZ_CP025682:c175156-174902 [Azoarcus pumilus]
MATVTVRNLPDEVHRALRVRAATHGRSTEAEIREILESTVRPPERLRLGSALAELGRRVGLTDDDIAAIEKVRDKTPTEP
VSFE
MATVTVRNLPDEVHRALRVRAATHGRSTEAEIREILESTVRPPERLRLGSALAELGRRVGLTDDDIAAIEKVRDKTPTEP
VSFE
Download Length: 255 bp
>AT91702 NZ_CP025682:c175156-174902 [Azoarcus pumilus]
ATGGCGACAGTCACCGTCAGAAATCTGCCGGACGAGGTGCATCGCGCGCTTCGTGTGCGCGCAGCGACGCACGGCCGCAG
CACCGAGGCCGAAATCCGCGAGATTCTCGAATCGACCGTTCGCCCGCCGGAGCGGCTTCGCTTGGGCTCGGCTCTCGCCG
AACTGGGCCGCCGCGTCGGGCTGACCGATGACGACATCGCGGCCATCGAGAAGGTGCGCGACAAGACCCCGACCGAGCCT
GTGAGCTTCGAATGA
ATGGCGACAGTCACCGTCAGAAATCTGCCGGACGAGGTGCATCGCGCGCTTCGTGTGCGCGCAGCGACGCACGGCCGCAG
CACCGAGGCCGAAATCCGCGAGATTCTCGAATCGACCGTTCGCCCGCCGGAGCGGCTTCGCTTGGGCTCGGCTCTCGCCG
AACTGGGCCGCCGCGTCGGGCTGACCGATGACGACATCGCGGCCATCGAGAAGGTGCGCGACAAGACCCCGACCGAGCCT
GTGAGCTTCGAATGA
Similar Proteins
Only experimentally validated proteins are listed.
Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
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Structures
Toxin
Source | ID | Structure |
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Antitoxin
Source | ID | Structure |
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