Detailed information of TA system
Overview
TA module
| Type | VIII | Classification (family/domain) | SdsR-RyeA/- |
| Location | 2006024..2006256 | Replicon | chromosome |
| Accession | NZ_CP025676 | ||
| Organism | Escherichia albertii strain ChinaSP140150 | ||
Toxin (RNA)
| Gene name | SdsR | ||
| Locus tag | - | ||
| Coordinates | 2006151..2006254 (+) |
Antitoxin (RNA)
| Gene name | RyeA | ||
| Locus tag | - | ||
| Coordinates | 2006024..2006256 (-) |
Genomic Context
| Locus tag | Coordinates | Strand | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C0R48_RS10100 | 2002954..2003616 | - | 663 | WP_000944295.1 | exodeoxyribonuclease X | - |
| C0R48_RS10105 | 2003640..2003852 | - | 213 | Protein_1859 | carbon-nitrogen hydrolase family protein | - |
| C0R48_RS10110 | 2004018..2004248 | - | 231 | WP_000916758.1 | DNA polymerase III subunit theta | - |
| C0R48_RS10115 | 2004387..2004764 | + | 378 | WP_059274852.1 | CopC domain-containing protein YobA | - |
| C0R48_RS10120 | 2004768..2005640 | + | 873 | WP_059234872.1 | copper homeostasis membrane protein CopD | - |
| C0R48_RS10125 | 2005653..2005994 | + | 342 | WP_000976487.1 | YebY family protein | - |
| - | 2006024..2006256 | - | 233 | - | - | Antitoxin |
| - | 2006151..2006254 | + | 104 | - | - | Toxin |
| C0R48_RS10135 | 2007999..2008319 | + | 321 | WP_054411012.1 | hypothetical protein | - |
| C0R48_RS10140 | 2008392..2009849 | + | 1458 | WP_024165002.1 | Trk system potassium transporter TrkG | - |
Associated MGEs
| MGE detail |
Similar MGEs |
Relative position |
MGE Type | Cargo ARG | Virulence gene | Coordinates | Length (bp) |
|---|---|---|---|---|---|---|---|
| - | inside | Prophage | - | espJ | 2002954..2031613 | 28659 |
Relative position:
(1) inside: TA loci is completely located inside the MGE;
(2) overlap: TA loci is partially overlapped with the MGE;
(3) flank: The TA loci is located in the 5 kb flanking regions of MGE.
Sequences
Toxin
Download Length: 104 bp
>T91661 NZ_CP025676:2006151-2006254 [Escherichia albertii]
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
GGCAAGGCAACTAAGCCTGCATTAATGCCAACTTTTAGCGCACGGCTCTCTCCCAAGAGCCATTTCCCTGGACCGAAAAC
AGGAATCGTTTTCGGTCTCTTTTT
Antitoxin
Download Length: 233 bp
>AT91661 NZ_CP025676:c2006256-2006024 [Escherichia albertii]
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
ATAAAAAGAGACCGAAAACGATTCCTGTTTTCGGTCCAGGGAAATGGCTCTTGGGAGAGAGCCGTGCGCTAAAAGTTGGC
ATTAATGCAGGCTTAGTTGCCTTGCCCTTTAAGAATAGATGACGACGCCAGGTTTTCCAGTTTGCGTACAAAATGGTCAG
TAAAAAGCGCGTCGGCCATCGTCTTAAATGTTAAAAACCGCCCGTTCTGGTGAAAGAACTGTGGCGGTTTTTT
